View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10260_low_17 (Length: 424)

Name: NF10260_low_17
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10260_low_17
NF10260_low_17
[»] chr6 (3 HSPs)
chr6 (1-408)||(6368456-6368859)
chr6 (2-61)||(5642546-5642605)
chr6 (21-60)||(32312815-32312854)
[»] chr8 (3 HSPs)
chr8 (42-120)||(41146216-41146294)
chr8 (46-127)||(29471776-29471857)
chr8 (9-60)||(41146130-41146181)
[»] chr3 (1 HSPs)
chr3 (43-115)||(48847597-48847669)
[»] chr5 (1 HSPs)
chr5 (45-100)||(12429818-12429873)
[»] chr1 (2 HSPs)
chr1 (21-60)||(9607674-9607713)
chr1 (27-60)||(30192232-30192265)
[»] scaffold0065 (1 HSPs)
scaffold0065 (21-60)||(49577-49616)
[»] chr4 (3 HSPs)
chr4 (42-120)||(41921941-41922019)
chr4 (18-60)||(41922054-41922096)
chr4 (24-60)||(49378892-49378928)
[»] chr2 (1 HSPs)
chr2 (22-52)||(36639113-36639143)
[»] chr7 (1 HSPs)
chr7 (46-115)||(10201437-10201506)


Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 6368859 - 6368456
Alignment:
Q  1 ctaagtgcatgttaggtattgcgtttgcaaaacggagtttgatgaaaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  6368859 ctaagtgcatgttaggtattgcgtttgcaaaacggagtttgatgaaaatcacggcaaaaatgcatcgggaagcgtgcaaacgtgcttttctgtgttgcaa 6368760  T
Q  101 acgtgaaaccaaacatacaccaagtaagcatatggaagaattaagttcaattggtttgaattcttgaatatgtcaagcagtgtcacgatagtttctacaa 200  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6368759 acgtgaaaccaaaca--cactaagtaagcatatggaagaattaagttcaattggtttgaattcttgaatatgtcaagcagtgtcacgatagtctctacaa 6368662  T
Q  201 atacatcaaatttataaaacatctctaaatgtgtctttcgttcgtcaattttgtcgtcaaacatgtgttccgtttctctatttggtgcttattaaaatta 300  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||   |||||||||    
T  6368661 atacaccaaatttataaaacatcactaaatgtgtctttcgttcgtcaattttgtcgtcaaacatgtgttcagtttcttcgtttggtgc---ttaaaatta 6368565  T
Q  301 ctagcagaagacacatccatagatattttcaaagtttcgatacatttagagactataatag-accacgtcacacatttacggaccaaaatgacaatttac 399  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  6368564 ctagcagaagacacatccatagatattttcaaagtttagatacatttagagactataatagcaccacctcacacatttacggaccaaaatgacaatttac 6368465  T
Q  400 tcatatact 408  Q
    |||||||||    
T  6368464 tcatatact 6368456  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 5642546 - 5642605
Alignment:
Q  2 taagtgcatgttaggtattgcgtttgcaaaacggagtttgatgaaaatcacggcaaaaat 61  Q
    |||| ||||||| ||||||| ||||| |||||||||||| |||||||||||| |||||||    
T  5642546 taagagcatgtttggtattgggtttgtaaaacggagtttaatgaaaatcacgacaaaaat 5642605  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 32312815 - 32312854
Alignment:
Q  21 gcgtttgcaaaacggagtttgatgaaaatcacggcaaaaa 60  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  32312815 gcgtttgcaaaacggactttgatggaaatcacggcaaaaa 32312854  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 41146216 - 41146294
Alignment:
Q  42 atgaaaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaacatacac 120  Q
    |||| |||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  41146216 atgagaatcacggcaaaaatgtatcggaaagcgtgcaagtatgcttttgtgtgttgcaaacgggaaaccaaacatacac 41146294  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 29471776 - 29471857
Alignment:
Q  46 aaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaacatacaccaagtaa 127  Q
    |||||||  ||||||||||||||||||| ||||| ||||||||| | |||||||||||  |||||||||| || ||||||||    
T  29471776 aaatcacaacaaaaatgcatcgggaagcatgcaaatgtgcttttatatgttgcaaacggaaaaccaaacacacgccaagtaa 29471857  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 41146130 - 41146181
Alignment:
Q  9 atgttaggtattgcgtttgcaaaacggagtttgatgaaaatcacggcaaaaa 60  Q
    ||||| || |||| |||||||||||||||||||||  |||||||||||||||    
T  41146130 atgtttggcattgtgtttgcaaaacggagtttgatagaaatcacggcaaaaa 41146181  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 48847669 - 48847597
Alignment:
Q  43 tgaaaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaaca 115  Q
    |||||||||||||||||||||||||| || |||||||   ||||||| | |||||||||||  ||||||||||    
T  48847669 tgaaaatcacggcaaaaatgcatcggaaaacgtgcaaacatgcttttgtatgttgcaaacggaaaaccaaaca 48847597  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 12429818 - 12429873
Alignment:
Q  45 aaaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaa 100  Q
    ||||||||||||||||||||| || ||||||||||  |||||||| ||||||||||    
T  12429818 aaaatcacggcaaaaatgcattggaaagcgtgcaaacgtgcttttatgtgttgcaa 12429873  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 9607713 - 9607674
Alignment:
Q  21 gcgtttgcaaaacggagtttgatgaaaatcacggcaaaaa 60  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  9607713 gcgtttgcaaaacggtgtttgatgaaaatcacggcaaaaa 9607674  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 30192232 - 30192265
Alignment:
Q  27 gcaaaacggagtttgatgaaaatcacggcaaaaa 60  Q
    |||||| |||||||||||||||||||||||||||    
T  30192232 gcaaaatggagtttgatgaaaatcacggcaaaaa 30192265  T

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Target: scaffold0065 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 49616 - 49577
Alignment:
Q  21 gcgtttgcaaaacggagtttgatgaaaatcacggcaaaaa 60  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  49616 gcgtttgcaaaacggagtttaatgaaaatcacgacaaaaa 49577  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 41922019 - 41921941
Alignment:
Q  42 atgaaaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaacatacac 120  Q
    |||| ||||||||||||||||||| || ||| ||||||  ||| |||| |||||||||||   |||| |||||||||||    
T  41922019 atgagaatcacggcaaaaatgcattggaaagtgtgcaaacgtgtttttgtgtgttgcaaagaggaaatcaaacatacac 41921941  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 41922096 - 41922054
Alignment:
Q  18 attgcgtttgcaaaacggagtttgatgaaaatcacggcaaaaa 60  Q
    |||||||||| |||||||||||||||  |||||||||||||||    
T  41922096 attgcgtttgaaaaacggagtttgatagaaatcacggcaaaaa 41922054  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 49378928 - 49378892
Alignment:
Q  24 tttgcaaaacggagtttgatgaaaatcacggcaaaaa 60  Q
    |||||||||||||||||||| |||||||||| |||||    
T  49378928 tttgcaaaacggagtttgataaaaatcacggtaaaaa 49378892  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 36639143 - 36639113
Alignment:
Q  22 cgtttgcaaaacggagtttgatgaaaatcac 52  Q
    |||||||||||||||||||||||||||||||    
T  36639143 cgtttgcaaaacggagtttgatgaaaatcac 36639113  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 10201437 - 10201506
Alignment:
Q  46 aaatcacggcaaaaatgcatcgggaagcgtgcaagtgtgcttttctgtgttgcaaacgtgaaaccaaaca 115  Q
    ||||||| |||||||| |||| | ||||||||||  ||| |||| |||||||||||||  ||||||||||    
T  10201437 aaatcacagcaaaaatacatcagaaagcgtgcaaacgtgattttgtgtgttgcaaacggaaaaccaaaca 10201506  T

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