View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10260_low_18 (Length: 423)

Name: NF10260_low_18
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10260_low_18
NF10260_low_18
[»] chr5 (26 HSPs)
chr5 (33-346)||(27351256-27351557)
chr5 (56-186)||(10591279-10591407)
chr5 (56-186)||(29156120-29156248)
chr5 (56-186)||(43511548-43511676)
chr5 (57-186)||(138075-138202)
chr5 (56-186)||(17513942-17514070)
chr5 (56-223)||(4734551-4734716)
chr5 (56-229)||(42291844-42292015)
chr5 (58-229)||(40956245-40956414)
chr5 (39-186)||(13656120-13656268)
chr5 (56-186)||(5829315-5829441)
chr5 (42-186)||(16515440-16515582)
chr5 (81-186)||(18873408-18873515)
chr5 (69-186)||(19099320-19099435)
chr5 (69-186)||(20975928-20976043)
chr5 (61-137)||(40779127-40779203)
chr5 (56-110)||(3349808-3349862)
chr5 (39-186)||(13474542-13474688)
chr5 (240-305)||(23069326-23069391)
chr5 (240-305)||(40779292-40779357)
chr5 (240-304)||(33281776-33281840)
chr5 (33-88)||(12661210-12661265)
chr5 (136-229)||(7390363-7390456)
chr5 (240-305)||(8379340-8379405)
chr5 (69-121)||(10033489-10033541)
chr5 (42-186)||(26377780-26377924)
[»] chr8 (18 HSPs)
chr8 (33-305)||(32098075-32098335)
chr8 (56-186)||(34523957-34524085)
chr8 (52-186)||(3628753-3628885)
chr8 (361-413)||(3574832-3574884)
chr8 (42-122)||(35874840-35874920)
chr8 (42-186)||(43968076-43968219)
chr8 (157-215)||(3575117-3575175)
chr8 (33-186)||(5869328-5869477)
chr8 (56-229)||(39697901-39698072)
chr8 (39-186)||(13585211-13585357)
chr8 (39-186)||(18420615-18420761)
chr8 (56-179)||(23567287-23567408)
chr8 (39-186)||(3471507-3471658)
chr8 (33-66)||(3575171-3575204)
chr8 (56-186)||(12531489-12531617)
chr8 (54-229)||(29372292-29372458)
chr8 (136-186)||(42951775-42951825)
chr8 (56-132)||(42777683-42777759)
[»] chr7 (24 HSPs)
chr7 (33-222)||(26633270-26633457)
chr7 (33-303)||(32956681-32956940)
chr7 (33-303)||(30739029-30739288)
chr7 (56-186)||(26282548-26282676)
chr7 (56-305)||(41852197-41852432)
chr7 (56-186)||(40001702-40001830)
chr7 (56-229)||(1365939-1366110)
chr7 (42-186)||(18015588-18015730)
chr7 (47-186)||(36438357-36438494)
chr7 (33-179)||(25061811-25061954)
chr7 (243-345)||(773740-773842)
chr7 (39-186)||(8358300-8358446)
chr7 (43-186)||(33909980-33910122)
chr7 (43-186)||(36796378-36796520)
chr7 (56-186)||(9479057-9479185)
chr7 (39-105)||(12251473-12251539)
chr7 (240-305)||(21145458-21145522)
chr7 (240-305)||(28590041-28590106)
chr7 (56-137)||(28590194-28590274)
chr7 (37-122)||(40841314-40841399)
chr7 (56-132)||(25610021-25610097)
chr7 (55-186)||(40737997-40738126)
chr7 (153-186)||(33419123-33419156)
chr7 (241-305)||(44876056-44876119)
[»] chr1 (25 HSPs)
chr1 (33-186)||(5560390-5560541)
chr1 (33-222)||(27703499-27703686)
chr1 (56-229)||(12971336-12971507)
chr1 (72-346)||(50371080-50371342)
chr1 (39-186)||(12884143-12884289)
chr1 (69-229)||(37873725-37873883)
chr1 (33-186)||(44836727-44836884)
chr1 (33-175)||(15441197-15441337)
chr1 (39-186)||(50552407-50552553)
chr1 (39-186)||(51110107-51110253)
chr1 (52-186)||(17674360-17674491)
chr1 (54-137)||(26486418-26486501)
chr1 (141-229)||(13120829-13120917)
chr1 (39-186)||(14084707-14084852)
chr1 (39-186)||(52055463-52055610)
chr1 (42-132)||(1269475-1269565)
chr1 (69-186)||(6150664-6150779)
chr1 (39-120)||(28189310-28189391)
chr1 (64-184)||(42740048-42740166)
chr1 (69-230)||(17487244-17487404)
chr1 (136-186)||(48722376-48722426)
chr1 (241-346)||(52240393-52240496)
chr1 (42-107)||(20470643-20470708)
chr1 (241-305)||(51109999-51110061)
chr1 (55-186)||(24556735-24556864)
[»] chr4 (22 HSPs)
chr4 (33-216)||(21791523-21791704)
chr4 (42-186)||(43154794-43154936)
chr4 (56-186)||(35653986-35654114)
chr4 (41-186)||(27632312-27632456)
chr4 (55-185)||(22423613-22423741)
chr4 (56-186)||(34982154-34982282)
chr4 (56-186)||(45172651-45172778)
chr4 (98-229)||(10575486-10575615)
chr4 (42-122)||(24449040-24449120)
chr4 (39-346)||(32130647-32130941)
chr4 (58-288)||(5545261-5545479)
chr4 (42-179)||(19661295-19661430)
chr4 (240-305)||(26328929-26328994)
chr4 (39-186)||(53011625-53011770)
chr4 (56-186)||(55134138-55134266)
chr4 (42-186)||(23426172-23426315)
chr4 (240-304)||(51066324-51066386)
chr4 (42-186)||(11681748-11681892)
chr4 (42-186)||(11690027-11690171)
chr4 (39-179)||(16072506-16072645)
chr4 (33-137)||(26329085-26329187)
chr4 (241-305)||(44478144-44478206)
[»] chr2 (29 HSPs)
chr2 (42-179)||(39081314-39081449)
chr2 (56-186)||(18916060-18916188)
chr2 (52-229)||(1418836-1419010)
chr2 (33-223)||(36059874-36060062)
chr2 (56-186)||(38985715-38985842)
chr2 (56-229)||(18172903-18173073)
chr2 (42-186)||(19367425-19367568)
chr2 (42-186)||(2063721-2063863)
chr2 (42-186)||(34061862-34062004)
chr2 (55-173)||(1226286-1226400)
chr2 (56-186)||(15457430-15457558)
chr2 (56-186)||(17117651-17117771)
chr2 (90-186)||(29480643-29480737)
chr2 (42-186)||(42411564-42411706)
chr2 (56-223)||(13997244-13997409)
chr2 (56-186)||(21747236-21747364)
chr2 (57-230)||(27302490-27302661)
chr2 (240-304)||(13001739-13001803)
chr2 (42-186)||(26151753-26151897)
chr2 (95-185)||(38599371-38599459)
chr2 (136-186)||(6530667-6530717)
chr2 (42-186)||(45618892-45619034)
chr2 (264-305)||(1419034-1419075)
chr2 (241-305)||(2063909-2063971)
chr2 (240-305)||(31273063-31273128)
chr2 (33-122)||(32186218-32186307)
chr2 (364-396)||(1226021-1226053)
chr2 (42-186)||(13020337-13020481)
chr2 (242-305)||(13020528-13020589)
[»] chr6 (21 HSPs)
chr6 (56-186)||(1690639-1690767)
chr6 (42-186)||(19231529-19231670)
chr6 (39-186)||(6754119-6754264)
chr6 (39-186)||(2618268-2618413)
chr6 (39-186)||(6360673-6360817)
chr6 (69-186)||(3748574-3748689)
chr6 (69-186)||(30915372-30915487)
chr6 (54-186)||(12614722-12614852)
chr6 (56-186)||(29308473-29308601)
chr6 (56-186)||(31860933-31861059)
chr6 (61-122)||(1093108-1093169)
chr6 (33-137)||(11088463-11088565)
chr6 (136-186)||(29401148-29401198)
chr6 (39-186)||(3514856-3515002)
chr6 (55-132)||(6294208-6294285)
chr6 (136-186)||(628101-628151)
chr6 (54-186)||(7525172-7525303)
chr6 (39-186)||(57600-57746)
chr6 (47-132)||(7341130-7341215)
chr6 (42-107)||(31258541-31258606)
chr6 (241-304)||(6360863-6360924)
[»] chr3 (28 HSPs)
chr3 (57-186)||(42009268-42009395)
chr3 (69-186)||(7767006-7767121)
chr3 (56-229)||(36538149-36538320)
chr3 (56-173)||(43905862-43905977)
chr3 (39-186)||(29387760-29387906)
chr3 (56-186)||(48627035-48627163)
chr3 (42-175)||(54430468-54430599)
chr3 (42-186)||(23164578-23164720)
chr3 (42-186)||(27303103-27303245)
chr3 (39-186)||(28132741-28132887)
chr3 (42-186)||(51939562-51939704)
chr3 (39-186)||(18408104-18408249)
chr3 (39-186)||(23067731-23067878)
chr3 (42-186)||(25599092-25599236)
chr3 (42-186)||(8364087-8364230)
chr3 (42-186)||(41707061-41707204)
chr3 (69-186)||(50677320-50677435)
chr3 (43-179)||(1649844-1649978)
chr3 (54-186)||(21784790-21784920)
chr3 (91-186)||(46904707-46904800)
chr3 (240-273)||(15987302-15987335)
chr3 (56-175)||(21596265-21596382)
chr3 (40-186)||(46791703-46791848)
chr3 (69-186)||(51146881-51146995)
chr3 (241-346)||(21596437-21596542)
chr3 (241-305)||(25598985-25599047)
chr3 (241-305)||(27110770-27110832)
chr3 (246-305)||(27303294-27303351)
[»] scaffold0126 (1 HSPs)
scaffold0126 (54-186)||(16637-16768)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 33 - 346
Target Start/End: Original strand, 27351256 - 27351557
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||| |  |||||     
T  27351256 gttacttccttttctttcttcagtatacgtttgagatttttctagactctagttctcctttctgaacataaatttggtgctatcaaaccacctccaatt- 27351354  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctcctttttc 232  Q
     | ||||  ||||| |||| |||||||| |||||||||||||||||| ||| ||||||||| || | ||||||||||||||| ||||||||| ||||       
T  27351355 -tgtataaccacttaatcagtcaatttggaaagttatttcattgaaagaataacctaaatcatttcttttttgcataaaccagtcattttcttcttt--- 27351450  T
Q  233 ccatttccccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaannnnnnnnatttcttgtcatgtttaga 332  Q
           |||||||||||||||||||||||  ||| |||||||||||||||||||| | ||||||||||||||        ||||| | |||||||||||    
T  27351451 -------cccacaacggaggagtgacaaatctaaacgacactattaggtaaatttcacctctctttcacttaattttttttatttcctttcatgtttaga 27351543  T
Q  333 agttcttctgattc 346  Q
    ||||||||||||||    
T  27351544 agttcttctgattc 27351557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 10591407 - 10591279
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| |||| |||| |||||||| |||| ||||||||||| || |||||  | |||| |||||| |||| | |    
T  10591407 tacacgtttgagttttttctagactttagttctcctatctgaacataaatatggtactatcaaaccacccccaatt--tgtataatcacttaatcagtta 10591310  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||||||||||||||||| ||||||    
T  10591309 atttgaaaagttatttcattgaaagaatcac 10591279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 29156120 - 29156248
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| ||||||| |||| |||| |||||||| |||| ||||||||||| ||  ||||  | |||| |||||| |||| |||    
T  29156120 tacacgtttgagttttttctagactatagttatcctatctgaacataaatctggtactatcaaaccacccctaatt--tgtataatcacttaatcagtca 29156217  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||| ||||||||||||||||||| ||||||    
T  29156218 atttaaaaagttatttcattgaaagaatcac 29156248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 43511548 - 43511676
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| |||| ||||||||||||| |||| ||||||||||| || |||||  | |||| |||||| |||| |||    
T  43511548 tacacgtttgagttttttctagactttagttctcctatctggacataaatctggtactatcaaaccacccccaatt--tgtataatcacttaatcagtca 43511645  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| |||||||| |||| ||||||    
T  43511646 atttgaaaagctatttcatggaaagaatcac 43511676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 138075 - 138202
Alignment:
Q  57 acacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaa 156  Q
    |||||| |||| |||||||||| | ||||| | ||||  ||||||||||||| ||||||||||||| | ||||||| ||||   |||||| |||| ||||    
T  138075 acacgtatgagttttttctagactctagttctacttttcggacataaatttgatgctatcaaaccaccatcaatttgtataa--tcacttaatcagtcaa 138172  T
Q  157 tttgaaaagttatttcattgaaataatcac 186  Q
    ||||||||| ||||||||||||||||||||    
T  138173 tttgaaaagctatttcattgaaataatcac 138202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 17514070 - 17513942
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| |||| |||||| |||||| |||| ||| ||||||| || |||||  | |||| |||||| |||| |||    
T  17514070 tacacgtttgaggtttttctagactttagttctcctatctggatataaatctggtactaacaaaccacccccaatt--tgtataatcacttaatcagtca 17513973  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||||||||||| ||||| ||||||    
T  17513972 atttgaaaagttatttcactgaaagaatcac 17513942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 4734716 - 4734551
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||| ||||||| |||||||||| | ||||| |||| ||||||||||||| |||| ||||||||||| |  |||||  | |||| || |||||||| |||    
T  4734716 tacatgtttgagttttttctagactttagttctcctatctggacataaatctggtactatcaaaccaccaccaatt--tgtataatcccttgatcactca 4734619  T
Q  156 atttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttc 223  Q
    |||||||||  ||||||||||||| ||||||   |||| || | ||||  |||||||||||| |||||    
T  4734618 atttgaaaatctatttcattgaaagaatcacaacaatcatttctttttcacataaaccattcgttttc 4734551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 229
Target Start/End: Complemental strand, 42292015 - 42291844
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||  |||||||| | | ||||| |||| |||||||||||||||||| |||||||| || |  |||||  | |||| |||||| |||| |||    
T  42292015 tacacgtttgacttttttctaaactttagttctcctatctggacataaatttggtactatcaaatcaccaccaatt--tgtataatcacttaatcagtca 42291918  T
Q  156 atttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    |||||||||  ||||||||||||| ||||||   |||| || | ||||  |||||||||||| ||||| |||||    
T  42291917 atttgaaaatctatttcattgaaagaatcacaacaatcatttctttttcacataaaccattcgttttccccttt 42291844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 229
Target Start/End: Original strand, 40956245 - 40956414
Alignment:
Q  58 cacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaat 157  Q
    |||||||||| |||||||||| | ||||| |||||| ||||||||||| || ||| |||||||  ||  |||||  | |||| |||||| |||||| |||    
T  40956245 cacgtttgagttttttctagactctagttctcctttgtggacataaatctgatgcaatcaaacattctccaatt--tgtataatcacttaatcatttaat 40956342  T
Q  158 ttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    |||||||  ||||||||| ||| ||||||   |||| || | |||||||||| ||||||| ||||| |||||    
T  40956343 ttgaaaaactatttcattaaaagaatcacaacaatcatttcttttttgcatacaccattcgttttccccttt 40956414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 13656120 - 13656268
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgct---atcaaaccatcctcaatttata 135  Q
    |||||||||||| | |||||||||||||| |||||||||| | ||||| |||||| || ||||||||  | | ||   |  |||||||||  ||||  |     
T  13656120 tcattttctttctttagtacacgtttgagttttttctagactctagttctcctttttgtacataaatcggatcctaaaaaaaaaccatccctaatt--tg 13656217  T
Q  136 tatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| ||||||    
T  13656218 tataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcac 13656268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 5829315 - 5829441
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| ||||| |||| | ||||| |||| ||| ||||||||| |||| ||||||||||| ||||||||  | |||| |||||| |||| |||    
T  5829315 tacacgtttgagttttttatagactttagttctcctatcttgacataaatctggtactatcaaaccaacctcaatt--tgtataatcacttaatcagtca 5829412  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    ||||  |||| ||||||||| ||| ||||||    
T  5829413 attt--aaagctatttcattaaaagaatcac 5829441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 16515440 - 16515582
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    |||| |||| ||||||||||| |||| ||||| || | | ||||| | |||||| |||||||||||| |||||| ||| || | ||||||| || ||| |    
T  16515440 ttttttttcttcagtacacgtatgagctttttttaaactttagttctactttctagacataaatttgatgctattaaaacaccatcaattt-ta-ataat 16515537  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||| |||| |||||||||||| |||||| ||||||| ||||||    
T  16515538 cacttaatcaatcaatttgaaaaattattttattgaaagaatcac 16515582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 18873408 - 18873515
Alignment:
Q  81 atagttttcctttctggacataaatttggtgctatcaaaccatcctcaatt--tatatatagtcacttgatcattcaatttgaaaagttatttcattgaa 178  Q
    |||||||| ||||||| ||||||||||| ||||||||||||| | ||||||  | | ||||  ||||| ||||  |||||||||||| ||||||||||||    
T  18873408 atagttttactttctgaacataaatttgatgctatcaaaccaccatcaattaatttgtataaccacttaatcagccaatttgaaaagctatttcattgaa 18873507  T
Q  179 ataatcac 186  Q
    | ||||||    
T  18873508 agaatcac 18873515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 19099435 - 19099320
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagtta 168  Q
    ||||| |||| ||||||| |||||| || |||||||| || | ||||||||||||||  ||||| ||||   |||||| |||| ||||||| ||||| ||    
T  19099435 tttttttagactatagttctcctttttgtacataaatctgatcctatcaaaccatccctaatttgtataa--tcacttaatcagtcaatttaaaaagcta 19099338  T
Q  169 tttcattgaaataatcac 186  Q
    ||||||||||| ||||||    
T  19099337 tttcattgaaagaatcac 19099320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 20975928 - 20976043
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagtta 168  Q
    |||||||||| | ||||| || | ||| |||||||||||||| ||||||||||| |  |||||| ||||   ||| || |||| ||||||||||||| ||    
T  20975928 tttttctagactttagttctcttatcttgacataaatttggtactatcaaaccaccaccaatttgtataa--tcatttaatcagtcaatttgaaaagcta 20976025  T
Q  169 tttcattgaaataatcac 186  Q
    ||||||||||| ||||||    
T  20976026 tttcattgaaagaatcac 20976043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 40779127 - 40779203
Alignment:
Q  61 gtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    ||||||| |||||||||| | ||||| ||||||||| ||||||||||| || |||||||| |||| |||||| ||||    
T  40779127 gtttgagttttttctagagtctagttctcctttctgaacataaatttgatgttatcaaactatccccaatttgtata 40779203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 3349862 - 3349808
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggt 110  Q
    |||||||||||| |||||||||| | ||||| |||| ||||||||||||||||||    
T  3349862 tacacgtttgagttttttctagactttagttctcctatctggacataaatttggt 3349808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 13474542 - 13474688
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    ||||||| |||| | |||||||||||||| ||||| ||| | | ||||| || ||| || ||||||||  | | ||||||||||| ||  ||||| ||||    
T  13474542 tcattttttttctttagtacacgtttgagtttttttctaaactctagttctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtata 13474641  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
       |||||| |||| ||||||||||||||| ||||||||||| ||||||    
T  13474642 a--tcacttaatcagtcaatttgaaaagttgtttcattgaaagaatcac 13474688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 23069326 - 23069391
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||||||| |||||||||||||||||||| |||||  ||||||||||||| | | ||||||| ||||    
T  23069326 cccacaatggaggagtgacaaattcaaacgacaccgttaggtaaatttcacatttctttcatttaa 23069391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 40779292 - 40779357
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||||||| |||||||||||||||  ||| ||||  |||||||||||||| | ||||||||||||||    
T  40779292 cccacaatggaggagtgacaaatcgaaacgacatcattaggtaaatttcacctctctttcacttaa 40779357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 33281776 - 33281840
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcactta 304  Q
    ||||||||||| |||||||||||||||| ||||   ||| ||||||||| | |||||||||||||    
T  33281776 cccacaacggatgagtgacaaattcaaacgacatcgttaagtaaatttcacctctctttcactta 33281840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 12661210 - 12661265
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagtttt 88  Q
    |||| ||||||||||||| | |||||||||||||| |||||||||| | |||||||    
T  12661210 gttatttcattttctttctttagtacacgtttgagttttttctagactctagtttt 12661265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 7390456 - 7390363
Alignment:
Q  136 tatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    |||| |||||| |||| ||||||| |||||||||||||| |||| ||||||   |||  || | |||| ||||||||||||| ||||| |||||    
T  7390456 tataatcacttaatcagtcaatttaaaaagttatttcatcgaaagaatcacgacaattatttctttttcgcataaaccattcgttttccccttt 7390363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 8379405 - 8379340
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||||||||||| ||||||||||| |||| |||||  ||  ||||||||| | ||||||||||||||    
T  8379405 cccacaacggatgagtgacaaatccaaacgacaccgttgcgtaaatttcacctctctttcacttaa 8379340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 10033489 - 10033541
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaacc 121  Q
    |||||||||| | ||||| | ||||||| ||||||||||| ||||||||||||    
T  10033489 tttttctagactctagttctactttctgtacataaatttgatgctatcaaacc 10033541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 26377924 - 26377780
Alignment:
Q  42 ttttctttcgtcagtacacgtttgag--atttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatata 139  Q
    ||||||||| | ||||||||||||||   |||||||||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||  | ||||    
T  26377924 ttttctttctttagtacacgtttgagttttttttctagactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatt--tgtata 26377827  T
Q  140 gtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     ||||||  ||| ||||| ||| ||| ||||||||||||| ||||||    
T  26377826 atcacttattcagtcaatgtgagaagctatttcattgaaagaatcac 26377780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 33 - 305
Target Start/End: Complemental strand, 32098335 - 32098075
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||| ||||||||| |||||||||||||||| |||||||||| | ||||| |||||| |||||||||||||| |||||||||||||  || ||||     
T  32098335 gttacttctttttctttcttcagtacacgtttgagttttttctagactctagttatcctttttggacataaatttgatgctatcaaaccactcttaatt- 32098237  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctcctttttc 232  Q
     | |||  |||||| |||| |||||||| |||  ||||||||||||| ||||||   |||  || | |||||||||||||||||| |||||        |    
T  32098236 -tgtatgatcacttaatcagtcaatttggaaaactatttcattgaaagaatcacaacaattatttcttttttgcataaaccattcgttttc--------c 32098146  T
Q  233 ccatttccccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    |||||  |||||||| |||||||||| ||| |||| |||||  ||| ||||||||| ||||||||||||||||    
T  32098145 ccatt--cccacaacagaggagtgacgaatccaaacgacaccgttacgtaaatttcacttctctttcacttaa 32098075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 34524085 - 34523957
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| |||| ||||||||||||| |||| ||||||||||| || |||||  | |||| |||||| |||| |||    
T  34524085 tacacgtttgagttttttctagactttagttctcctatctggacataaatctggtactatcaaaccacccccaatt--tgtataatcacttaatcagtca 34523988  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| ||||||||||||| ||||||    
T  34523987 atttgaaaagctatttcattgaaagaatcac 34523957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 3628885 - 3628753
Alignment:
Q  52 tcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatca 151  Q
    ||||||||||| |||| |||||||||| | ||||| | | |||||| |||||||||| ||||||||||||| | | ||||  | |||| |||| | ||||    
T  3628885 tcagtacacgtatgagttttttctagactctagttctacattctggtcataaatttgatgctatcaaaccaccattaatt--tgtataatcacataatca 3628788  T
Q  152 ttcaatttgaaaagttatttcattgaaataatcac 186  Q
     ||||||||||||||||||||||||||| ||||||    
T  3628787 gtcaatttgaaaagttatttcattgaaagaatcac 3628753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 3574884 - 3574832
Alignment:
Q  361 aatagagagtcaagcctcctatttcataggaacggctctgggtaacacctatg 413  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3574884 aatagagagtcgagcctcctatttcataggaacggctctgggtaacacctatg 3574832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 35874840 - 35874920
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaacca 122  Q
    ||||||||| ||||||||||| |||| |||||||||| | ||||| | ||||||||| ||||||||| |||||||||||||    
T  35874840 ttttctttcttcagtacacgtatgagttttttctagactctagttctactttctggatataaatttgatgctatcaaacca 35874920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 43968219 - 43968076
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaacca-tcctcaatttatatata 139  Q
    ||||||||| | |||||||||||||| ||||| ||||| | ||||| |||||| || ||||||||  | | ||||||||||| |||| ||||| ||||      
T  43968219 ttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccactcct-aatttgtataa- 43968122  T
Q  140 gtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     |||||| |||| ||||||||||||||||||||||||||| ||||||    
T  43968121 -tcacttaatcaatcaatttgaaaagttatttcattgaaagaatcac 43968076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 3575175 - 3575117
Alignment:
Q  157 tttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccat 215  Q
    ||||||||| ||||||||||||| ||||||||||||| || ||||||||||||||||||    
T  3575175 tttgaaaagctatttcattgaaagaatcacctaaatcatttcatttttgcataaaccat 3575117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 5869477 - 5869328
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||  ||||||||  |||||||||| ||||| ||||| |||| | ||||| ||||||||| ||||||||| | | ||||||||||| || ||||||    
T  5869477 gttacttatttttctttattcagtacacgattgagttttttttagactttagttctcctttctgtacataaatt-gatactatcaaacca-ccacaattt 5869380  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     || |   |||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  5869379 ttaaaa--tcacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 5869328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 229
Target Start/End: Complemental strand, 39698072 - 39697901
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| |||| ||| | |||||||||||| ||||||||||| |  |||||  | |||  ||| || || | |||    
T  39698072 tacacgtttgagttttttctagactttagttctcctatcttggcataaatttggtactatcaaaccaccaccaatt--tgtatgatcatttaattagtca 39697975  T
Q  156 atttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    |||||||||| ||||||||||||| ||||||   |||  || | ||||| |||||||||||| ||||| |||||    
T  39697974 atttgaaaagctatttcattgaaagaatcacaacaattatttcttttttacataaaccattcgttttcgccttt 39697901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 13585211 - 13585357
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgag-atttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| | ||||||||||||||  |||||||||| | |||||||| ||| || ||||||||  | | ||||||||||| ||  ||||  | ||    
T  13585211 tcattttctttctttagtacacgtttgagtttttttctagactctagttttcttttttgtacataaatcagatcctatcaaaccacccctaatt--tgta 13585308  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    || ||| || |||| |||||||| |||| ||||||||||||| ||||||    
T  13585309 taatcaattaatcagtcaatttggaaagctatttcattgaaagaatcac 13585357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 18420761 - 18420615
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| | |||||||||||||| ||||| | ||| | ||||| |||||| || ||||||||  | | |||||||||||  || ||||| ||||    
T  18420761 tcattttctttctttagtacacgtttgagtttttttccagactctagttctcctttttgtacataaatcagatcctatcaaaccacacttaatttgtata 18420662  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
       |||||| |||| ||||||||||||| | ||||||||||| ||||||    
T  18420661 a--tcacttaatcagtcaatttgaaaagctgtttcattgaaagaatcac 18420615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 23567408 - 23567287
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| || | |||| |||||||| || | ||||||||||| || |||||  | |||| |||||| |||| |||    
T  23567408 tacacgtttgaggtttttctagactttagttctcttatctgaacataaatctgctactatcaaaccacccccaatt--tgtataatcacttaatcagtca 23567311  T
Q  156 atttgaaaagttatttcattgaaa 179  Q
    ||||||||   |||||||||||||    
T  23567310 atttgaaatactatttcattgaaa 23567287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 3471507 - 3471658
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagattttt------ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||||||| ||||||||| |||||| |||||      ||||| | ||||| || ||| || |||||||| || | ||||||||||| ||  |||||    
T  3471507 tcattttctttcttcagtacacatttgagttttttttctttctagaatctagttctcatttttgtacataaatgtgattctatcaaaccacccctaattt 3471606  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     ||||   |||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  3471607 gtataa--tcacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 3471658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 3575204 - 3575171
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttga 66  Q
    ||||||||||||||||||||||||||||||||||    
T  3575204 gttacttcattttctttcgtcagtacacgtttga 3575171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 12531489 - 12531617
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| |||| || | |||||||| | || ||||||||| | |  |||||  | |||| |||||| |||| |||    
T  12531489 tacacgtttgagttttttctagactttagttctcctatccgaacataaatcttgtactatcaaactacctccaatt--tgtataatcacttaatcagtca 12531586  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||| ||||  ||||||||||||| ||||||    
T  12531587 atttaaaaatctatttcattgaaagaatcac 12531617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 29372292 - 29372458
Alignment:
Q  54 agtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcatt 153  Q
    |||||| ||||||| |||||||| | | |||||||||||||||||||||       ||||||||||| | || |||||  | |||| ||| || |||| |    
T  29372292 agtacatgtttgagttttttctaaactttagttttcctttctggacata-------tgctatcaaactacccacaatt--tgtataatcatttaatcagt 29372382  T
Q  154 caatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    ||||||| |||||||||  ||||||| ||| ||   |||| ||   |||| ||||||||||||||||||| |||||    
T  29372383 caatttggaaagttattcaattgaaagaatgacaacaatcatttatttttcgcataaaccattcattttccccttt 29372458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 42951825 - 42951775
Alignment:
Q  136 tatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||| |||||| |||| ||||||||||||||||||| ||||||| ||||||    
T  42951825 tataatcacttaatcagtcaatttgaaaagttattttattgaaagaatcac 42951775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 42777683 - 42777759
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||||||  |||||||||||| || || ||||||||  |||||||| || || |||||||||| || ||||||    
T  42777683 tacacgtttgaattttttctagattctaattctcctttctatacataaatatgatgatatcaaaccacccccaattt 42777759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 26633270 - 26633457
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||| ||||||||| || |||||||| |||| |||||||||| | ||||| | ||||||||||||||||||| |||||| |||||| | ||||||     
T  26633270 gttacttctttttctttcttcggtacacgtatgagttttttctagactctagttctactttctggacataaatttgatgctataaaaccaccatcaatt- 26633368  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcatttt 222  Q
     | |||| |||||| |||| ||||||||||||| ||||||||||||| ||||||   |||| || | |||| ||||||||||||||||||    
T  26633369 -tgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttctttttcgcataaaccattcatttt 26633457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 303
Target Start/End: Original strand, 32956681 - 32956940
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttct-agattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatt 131  Q
    |||||||| ||||||||| || ||||||||||||| ||||| | ||| | ||||| |||||||||||||||||| || ||||||||||||| || |||||    
T  32956681 gttacttctttttctttcttcggtacacgtttgagtttttttttagactctagttctcctttctggacataaatctgatgctatcaaaccacccccaatt 32956780  T
Q  132 tatatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttttt 231  Q
      | |||| ||| || |||| |||||||  |||||||||||||||||| ||||||   |||  || | |||| ||||||||||||| ||||| |||||      
T  32956781 --tttataatcatttaatcagtcaatttataaagttatttcattgaaagaatcacaacaatgatttctttttcgcataaaccattcgttttccccttt-- 32956876  T
Q  232 cccatttccccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcactt 303  Q
            ||||||||||| ||||||||||| |||| |||||| ||||||||||||| | | ||||||||||    
T  32956877 --------cccacaacggatgagtgacaaatccaaacgacactgttaggtaaatttcacctatctttcactt 32956940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 33 - 303
Target Start/End: Original strand, 30739029 - 30739288
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttt-tctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatt 131  Q
    |||||||| ||||||||  || ||||||||||||| |||| ||||||||  | || ||||||||||||||||||  | ||||||||||||||| ||||||    
T  30739029 gttacttctttttcttttttcggtacacgtttgagtttttttctagattccaattctcctttctggacataaatcggatgctatcaaaccatcttcaatt 30739128  T
Q  132 tatatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttttt 231  Q
      | |||| |||||| |||| ||||||||||||||||||||||| ||| ||||||    ||| || | |||| |||||||| |||  ||||| |||||||    
T  30739129 --tttataatcacttaatcagtcaatttgaaaagttatttcattaaaagaatcacaacgatcatttccttttcgcataaacaattagttttccccttttt 30739226  T
Q  232 cccatttccccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcactt 303  Q
              |||||||| |||||||||||| ||||||||||  || |||||||||| | ||||||||||||    
T  30739227 ----------cacaacggcggagtgacaaatccaaatgacaccgtttggtaaatttcacctctctttcactt 30739288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 26282676 - 26282548
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| |||| |||| |||||||| |||| ||||||||||| || |||||  | |||| |||||| |||| |||    
T  26282676 tacacgtttgagttttttctagactttagttctcctatctgcacataaatctggtactatcaaaccacccccaatt--tgtataatcacttaatcagtca 26282579  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| ||||||||||||| ||||||    
T  26282578 atttgaaaagctatttcattgaaagaatcac 26282548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 305
Target Start/End: Complemental strand, 41852432 - 41852197
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||| | |||||||||| | ||||| ||||||| |||  ||||| ||||||||| ||||||  | ||||||   |||| ||||||  ||| |||    
T  41852432 tacacgtttgggttttttctagactttagttctcctttcaggatgtaaatatggtgctataaaaccactc-caattt---tataatcacttactcagtca 41852337  T
Q  156 atttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctcctttttcccatttccccacaacggaggagt 255  Q
    |||| || |||||||||||||||| |||| |   | || || | ||||||||||||  |||||||||| ||||||          |||||||||||||||    
T  41852336 atttaaagagttatttcattgaaagaatcgcaacactcatttcttttttgcataaataattcattttcccctttt----------ccacaacggaggagt 41852247  T
Q  256 gacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    |||||||||||| |||||  |||| |||||||| | ||||||||||||||    
T  41852246 gacaaattcaaacgacaccgttagataaatttcacatctctttcacttaa 41852197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 40001830 - 40001702
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| | || |||| |||||||| |||| ||||||||||| |  |||||| ||||   |||||| |||| |||    
T  40001830 tacacgtttgaggtttttctagactttagttcttctatctgaacataaatctggtactatcaaaccacctccaatttgtataa--tcacttaatcagtca 40001733  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| ||||||||||||| ||||||    
T  40001732 atttgaaaagctatttcattgaaagaatcac 40001702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 1365939 - 1366110
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| || ||||||| | ||||| |||| |||||||||||||||||| |||||||||||    |||||    |||| | |||| |||| |||    
T  1365939 tacacgtttgagtttcttctagactttagttctcctatctggacataaatttggtactatcaaaccactaccaatt--ggtataatgacttaatcagtca 1366036  T
Q  156 atttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    ||||||||||||||||||| |||| ||||||   |||| || | ||||  |||||||||||| ||||| |||||    
T  1366037 atttgaaaagttatttcatagaaagaatcacaacaatcatttctttttcacataaaccattcgttttccccttt 1366110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 18015730 - 18015588
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    ||||||||| | |||||| ||||||| |||||||||| | |||||||||||| || ||||||||  | | ||||||||||| ||  ||||  | |||| |    
T  18015730 ttttctttctttagtacatgtttgagttttttctagactctagttttcctttttgtacataaatcggatcctatcaaaccacccctaatt--tgtataat 18015633  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||| |||| |||||||| |||| ||||||||||||| ||||||    
T  18015632 cacttaatcaatcaatttggaaagctatttcattgaaagaatcac 18015588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 36438494 - 36438357
Alignment:
Q  47 tttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcactt 146  Q
    |||| |||||||| || |||| |||||||||  | ||||| | ||||||||||||||||||| |||||||||||||   ||||||  | |||| ||||||    
T  36438494 tttcttcagtacaggtatgagttttttctaggctctagttctactttctggacataaatttgatgctatcaaaccactatcaatt--tgtataatcactt 36438397  T
Q  147 gatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     |||| ||||||||||||   |||||||||||| ||||||    
T  36438396 aatcagtcaatttgaaaaaccatttcattgaaagaatcac 36438357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 25061811 - 25061954
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||| ||||||||| || |||||||||| | |||||| |||| | ||||| | |||| ||||||||||| || ||||||||||| || |||||||     
T  25061811 gttacttctttttctttcttcggtacacgtttta-atttttttagactctagttcttctttttggacataaatctgatgctatcaaactattctcaatt- 25061908  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcattgaaa 179  Q
     | || | |||||| |||| | ||||||||||| |||||||||||||    
T  25061909 -tgtacaatcactttatcagttaatttgaaaagctatttcattgaaa 25061954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 345
Target Start/End: Complemental strand, 773842 - 773740
Alignment:
Q  243 acaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaannnnnnnnatttcttgtcatgtttagaagttcttctg 342  Q
    ||||||||||||| ||||||||||| ||| |  ||||||||||||| | ||||||||||||||        ||||| | |||||||||||||||||||||    
T  773842 acaacggaggagtcacaaattcaaacgacgccgttaggtaaatttcacatctctttcacttaattttttttatttcgtttcatgtttagaagttcttctg 773743  T
Q  343 att 345  Q
    |||    
T  773742 att 773740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 8358446 - 8358300
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttt-tctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| | |||| ||||||||| |||| |||||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||  ||||    
T  8358446 tcattttctttctttagtatacgtttgagtttttctctagactttagttctcctttttgtacataaatcggatcctatcaaaccacccctaatt--tata 8358349  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    || |||||| |||| ||||||| ||||||||| ||||||||| ||||||    
T  8358348 taatcacttaatcagtcaatttaaaaagttatctcattgaaagaatcac 8358300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 33909980 - 33910122
Alignment:
Q  43 tttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    |||||||| || ||||||||||||| ||||| ||||| | ||||| |||||| || |||||||| || | |||||||| || ||  ||||| ||||   |    
T  33909980 tttctttcttcggtacacgtttgagtttttttctagactctagttctcctttttgtacataaatctgatcctatcaaatcacccctaatttgtataa--t 33910077  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    | ||| |||| ||||||||||||| ||||||||||||| ||||||    
T  33910078 cgcttaatcagtcaatttgaaaagctatttcattgaaagaatcac 33910122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 36796520 - 36796378
Alignment:
Q  43 tttctttcgtcagtacacgtttgagatttttctaga-ttatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    |||||||| | |||||||||||||| |||||||||| || ||||| |||||| || ||||||||  | | ||||||||| | ||| ||||| ||||   |    
T  36796520 tttctttctttagtacacgtttgagttttttctagacttctagttctcctttttgtacataaatcggatcctatcaaactacccttaatttgtataa--t 36796423  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     |||| |||| |||||||| ||| |||||||||||||| ||||||    
T  36796422 aacttaatcagtcaatttggaaaattatttcattgaaagaatcac 36796378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 9479057 - 9479185
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    ||||||| |||  |||||||| | | ||||| | ||||||||||||||||||| ||||||||||||| | ||||||  | |||| | |||| |||| |||    
T  9479057 tacacgtatgatttttttctaaactctagttctactttctggacataaatttgatgctatcaaaccaccatcaatt--tgtataattacttaatcagtca 9479154  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||| ||||  |||||| |||||| ||||||    
T  9479155 atttaaaaaactatttcgttgaaagaatcac 9479185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 12251539 - 12251473
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaat 105  Q
    |||||||||||| | |||||||||||||| |||||||||| | ||||| |||||| || ||||||||    
T  12251539 tcattttctttctttagtacacgtttgagttttttctagactctagttctcctttttgtacataaat 12251473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 21145458 - 21145522
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||||| |||||||||||||||||||||| |||||  ||||||||||||| | || |||||||||||    
T  21145458 cccactacggaggagtgacaaattcaaacgacac-gttaggtaaatttcacctccctttcacttaa 21145522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 28590106 - 28590041
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||||||||||||||||||||||| |||| |||| | ||||||||| ||| | |||||| |||||||    
T  28590106 cccacaacggaggagtgacaaatccaaacgacattgttaggtaaaattcacctctcttccacttaa 28590041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 28590274 - 28590194
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||| ||||||| |||||||||||| ||||| ||||||||||||| ||||  | ||||| ||||||| || |||||||||||    
T  28590274 tacatgtttgagttttttctagatt-tagttatcctttctggacaaaaatacgatgctaccaaaccacccccaatttatata 28590194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 40841399 - 40841314
Alignment:
Q  37 cttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaacca 122  Q
    |||| ||||||||| |||||||| ||||||| |||||||||| | || || | |||| ||||||||||| || || ||||||||||    
T  40841399 cttctttttctttcttcagtacatgtttgagttttttctagactctaattattctttttggacataaatatgatgttatcaaacca 40841314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 25610021 - 25610097
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    ||||| |||| | |||||||||| | ||||| |||| |||| |||||||| |||| ||||||||||| |||||||||    
T  25610021 tacacatttgggttttttctagactttagttctcctatctgaacataaatctggtactatcaaaccaacctcaattt 25610097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 40738126 - 40737997
Alignment:
Q  55 gtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattc 154  Q
    |||| ||| |||| |||||||| | | ||||| | |||| | |||||||||||| ||||||||||||| | ||||||  | |||| | |||| |||| ||    
T  40738126 gtacgcgtatgagttttttctaaactctagttctacttttttgacataaatttgatgctatcaaaccaccatcaatt--tgtataattacttaatcagtc 40738029  T
Q  155 aatttgaaaagttatttcattgaaataatcac 186  Q
    ||||| ||||| ||||| ||||||| ||||||    
T  40738028 aatttaaaaagctattttattgaaagaatcac 40737997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 33419156 - 33419123
Alignment:
Q  153 tcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||||||||||||||||||||||||| ||||||    
T  33419156 tcaatttgaaaagttatttcattgaaagaatcac 33419123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 44876119 - 44876056
Alignment:
Q  241 ccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    |||||| | ||||||||||||| |||| |||||| |||||||||||||   ||||||||||||||    
T  44876119 ccacaatgaaggagtgacaaatccaaacgacact-ttaggtaaatttcatctctctttcacttaa 44876056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 5560390 - 5560541
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||  ||||||||| |||||||||||||||||||||| |||| ||||||| || ||||||||||||||| |||||||| ||||||| || |||||     
T  5560390 gttacttttttttctttcttcagtacacgtttgagatttttttagactatagttctcatttctggacataaatctggtgctaccaaaccacccccaatt- 5560488  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     | |||| |||||| |||| ||||||| ||||||||||||||||||| ||||||    
T  5560489 -tgtataatcacttaatcagtcaatttaaaaagttatttcattgaaagaatcac 5560541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 27703686 - 27703499
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||| ||||||||| | |||||||||||||| |||||||||| | ||||| || ||| || ||||||||||| ||||||||||||| || |||||     
T  27703686 gttacttctttttctttctttagtacacgtttgagttttttctagactctagttctcttttttgaacataaatttgatgctatcaaaccacccccaatt- 27703588  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcatttt 222  Q
     | |||| |||||| |||| |||||||| |||| |||||||| |||| ||||||   |||| || |||||| ||||||||||||| ||||    
T  27703587 -tgtataatcacttaatcagtcaatttggaaagctatttcatcgaaagaatcacaacaatcatttcattttcgcataaaccattcgtttt 27703499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 12971336 - 12971507
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| |||| ||||||||||||| || |  |||||||||| || |||||  | |||| |||||| |||| |||    
T  12971336 tacacgtttgagttttttctagactttagttctcctatctggacataaatctgatattatcaaaccacccccaatt--tgtataatcacttaatcagtca 12971433  T
Q  156 atttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    |||||||||| |||||||| |||| ||||||   |||| || | ||||  |||||||||||| ||||| |||||    
T  12971434 atttgaaaagctatttcatcgaaagaatcacaacaatcatttctttttcacataaaccattcgttttccccttt 12971507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 346
Target Start/End: Original strand, 50371080 - 50371342
Alignment:
Q  72 ttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagttattt 171  Q
    ||||||| | ||||| ||||||||||| ||||| ||| |||||||||| || ||||||||  | |||| |||||| |||| ||||||||||||  | |||    
T  50371080 ttctagactctagttctcctttctggatataaagttgatgctatcaaatcaccctcaatt--tgtataatcacttaatcagtcaatttgaaaaactgttt 50371177  T
Q  172 cattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctcctttttcccatttccccacaacggaggagtgacaaattcaaatgac 271  Q
    |||||||| ||||||   |||| || | |||| ||||||| |||        |  ||||||||  || ||||||||||||||||||||||| ||||  ||    
T  50371178 cattgaaagaatcacaacaatcatttctttttcgcataaatcat--------tagtttttccc--ttacccacaacggaggagtgacaaatccaaacaac 50371267  T
Q  272 actattaggtaaatttcccttctctttcacttaannnnnnnnatttcttgtcatgtttagaagttcttctgattc 346  Q
    |   ||||||||||||| | ||||||||||||||        ||||| | |||||||||||||||||| ||||||    
T  50371268 atcgttaggtaaatttcacctctctttcacttaattttttttatttcgtttcatgtttagaagttcttatgattc 50371342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 12884289 - 12884143
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| | |||||||||||||| ||||| ||||| | |||||||||||| || ||||||||  | | ||||||||||| ||  ||||| ||||    
T  12884289 tcattttctttctttagtacacgtttgagtttttttctagactctagttttcctttttgtacataaatcggatcctatcaaaccacccctaatttgtata 12884190  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
       |||||| |||| ||||||| ||||| ||||||||||||| ||||||    
T  12884189 a--tcacttaatcagtcaatttaaaaagctatttcattgaaagaatcac 12884143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 37873883 - 37873725
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagtta 168  Q
    |||||||||| | ||||| | |||||| |||||||||||| ||||||||||||| | ||||||  | ||||||||||| |||| | ||||||||||  |     
T  37873883 tttttctagactctagttctactttctagacataaatttgatgctatcaaaccaccatcaatt--tgtatagtcacttaatcagttaatttgaaaaactg 37873786  T
Q  169 tttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    ||||||||||| ||||||   |||  || | ||| |||||||||||||| ||||| |||||    
T  37873785 tttcattgaaagaatcacaacaattatttcttttctgcataaaccattcgttttccccttt 37873725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 44836884 - 44836727
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagattttt------ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcct 126  Q
    |||||||||||||||||| ||  ||||||| |||| |||||      ||||||| ||||| | ||||||| ||||||||||| ||||||||||||| | |    
T  44836884 gttacttcattttctttcttcgatacacgtatgagttttttttctttctagattctagttctactttctgaacataaatttgatgctatcaaaccaccat 44836785  T
Q  127 caatttatatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||||  | |||| |||||| |||| ||||||||||||  ||||||| ||||| ||||||    
T  44836784 caatt--tgtataatcacttaatcagtcaatttgaaaaactatttcactgaaagaatcac 44836727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 175
Target Start/End: Original strand, 15441197 - 15441337
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||| ||||||||| ||  |||||||||||| |||||||||| | ||||| |||||||| ||||||||| |  ||||||||||||| |  |||||     
T  15441197 gttacttctttttctttcttcgatacacgtttgagttttttctagactctagttctcctttctagacataaatataatgctatcaaaccacctacaatt- 15441295  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcatt 175  Q
     | |||| |||||| |||| |||||||  |||| |||||||||    
T  15441296 -tgtataatcacttaatcactcaatttataaagctatttcatt 15441337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 50552407 - 50552553
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttc-tagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| | |||||||||||||| |||||  |||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||| ||||    
T  50552407 tcattttctttctttagtacacgtttgagtttttttgtagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtata 50552506  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
       |||||| |||  ||||||||||||||||||||||||||| ||||||    
T  50552507 a--tcacttaatcggtcaatttgaaaagttatttcattgaaagaatcac 50552553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 51110253 - 51110107
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| | |||||||||||||| ||||| ||||| ||||||| |||||| || ||||||||  | | ||||||||||| ||  ||||| ||||    
T  51110253 tcattttctttctttagtacacgtttgagtttttttctagactatagttatcctttttgtacataaatcggatcctatcaaaccacccctaatttctata 51110154  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
       |||||| |||| |||||||  |||| ||||||||||||| ||||||    
T  51110153 a--tcacttaatcagtcaatttagaaagctatttcattgaaagaatcac 51110107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 17674491 - 17674360
Alignment:
Q  52 tcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatca 151  Q
    ||||||||||| |||| |||||||||| | ||||||  |||||| || ||||||||| |||||| |||||| | |||||||  |||   |||||| ||||    
T  17674491 tcagtacacgtatgag-tttttctagactctagtttcactttctagatataaatttgatgctattaaaccaccatcaatttgaataa--tcacttaatca 17674395  T
Q  152 ttcaatttgaaaagttatttcattgaaataatcac 186  Q
     ||||||||||||  ||||||||||||| ||||||    
T  17674394 gtcaatttgaaaaactatttcattgaaagaatcac 17674360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 26486501 - 26486418
Alignment:
Q  54 agtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    ||||||||| |||| |||||||| | | ||||| | ||||||||| ||||||||| ||||||||||||||| ||||||| ||||    
T  26486501 agtacacgtatgagttttttctaaactctagttctactttctggaaataaatttgatgctatcaaaccatcatcaatttgtata 26486418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 13120917 - 13120829
Alignment:
Q  141 tcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    |||||| |||| ||||||||||||  ||||||||||||| |||||||  |||  || | |||| ||||||||||||||||||| |||||    
T  13120917 tcacttaatcagtcaatttgaaaaactatttcattgaaagaatcaccacaattatttctttttcgcataaaccattcattttccccttt 13120829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 14084852 - 14084707
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatat 138  Q
    |||||||||||| |||||||| ||||||  |||||||||| | ||||| |||||| || |||||||| || | |||||||| || ||  ||   || |||    
T  14084852 tcattttctttcttcagtacaggtttgaattttttctagactctagttctcctttttgtacataaatctgatcctatcaaatcacccctaa--aatgtat 14084755  T
Q  139 agtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    | |||||| |||| |||||||  |||| ||||||||||||| ||||||    
T  14084754 aatcacttaatcagtcaatttagaaagctatttcattgaaagaatcac 14084707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 52055463 - 52055610
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttct--agattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatat 136  Q
    |||||||||||| |||||| ||||||||| ||||| |  ||| | ||||| |||||| || |||||||| |  |  |||||||| ||||  |||||||||    
T  52055463 tcattttctttcttcagtatacgtttgagttttttttttagactctagttctcctttttgtacataaatctaatcatatcaaactatccataatttatat 52055562  T
Q  137 atagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |   |||||| |||| |||||||| |||| ||||||||||||| ||||||    
T  52055563 aa--tcacttaatcaatcaatttggaaagctatttcattgaaagaatcac 52055610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 1269475 - 1269565
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    ||||||||  || ||||||||||||| |||||||||| | || || |||||||| ||||||||| || |||||| |||||| || ||||||    
T  1269475 ttttcttttttctgtacacgtttgagttttttctagactctaattctcctttctagacataaatctgatgctatgaaaccacccccaattt 1269565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 6150664 - 6150779
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagtta 168  Q
    |||||||||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||||||||   ||| || |||| ||||||||||||| ||    
T  6150664 tttttctagactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttatataa--tcatttaatcagtcaatttgaaaagcta 6150761  T
Q  169 tttcattgaaataatcac 186  Q
    ||||||||||| ||||||    
T  6150762 tttcattgaaagaatcac 6150779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 28189310 - 28189391
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaac 120  Q
    |||||||||||| ||| |||||||||||| ||||| |||| | ||||| |||||| || |||||||| || | |||||||||    
T  28189310 tcattttctttcttcaatacacgtttgagttttttttagactttagttctcctttttgtacataaatctgatcctatcaaac 28189391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 42740048 - 42740166
Alignment:
Q  64 tgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaa 163  Q
    |||| |||||||||| | ||||| | |||||||||||||| |||| ||||||||||| | | ||||||| ||||   | |||| || | |||||||||||    
T  42740048 tgagttttttctagactctagttctactttctggacataagtttgatgctatcaaacaaccatcaatttgtataa--taacttaattagtcaatttgaaa 42740145  T
Q  164 agttatttcattgaaataatc 184  Q
    |  ||||||||||||| ||||    
T  42740146 aactatttcattgaaagaatc 42740166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 17487404 - 17487244
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagtta 168  Q
    |||||||||| | ||||| |||||| |  ||||||||  | | ||||||||||| ||  ||||||||||   |||||| || | |||||||| |||||||    
T  17487404 tttttctagactctagttctcctttttttacataaatcggatcctatcaaaccacccctaatttatataa--tcacttaataaatcaatttggaaagtta 17487307  T
Q  169 tttcattgaaataatcacctaaatcgttccatt-tttgcataaaccattcattttctcctttt 230  Q
    ||||||||||| ||||||   |||| ||   || |||||||||||||||| |||| |||||||    
T  17487306 tttcattgaaagaatcacaacaatcatttttttctttgcataaaccattcgttttatcctttt 17487244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 48722426 - 48722376
Alignment:
Q  136 tatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||| |||||| |||| |||||||| |||| ||||||||||||||||||||    
T  48722426 tataatcacttaatcagtcaatttggaaagctatttcattgaaataatcac 48722376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 52240496 - 52240393
Alignment:
Q  241 ccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaannnnnnnnatttcttgtcatgtttagaagttcttc 340  Q
    ||||||| |||||| |||||||||||| |||||| |||| |||||||| |  |||||||||||||        | ||| | |||| ||||||||||||||    
T  52240496 ccacaacagaggagcgacaaattcaaacgacactgttagataaatttcac--ctctttcacttaattttttttaattcctttcatatttagaagttcttc 52240399  T
Q  341 tgattc 346  Q
    ||||||    
T  52240398 tgattc 52240393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 20470643 - 20470708
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaattt 107  Q
    ||||||||| | |||||||||||||| |||||||||| | || || |||||| || ||||||||||    
T  20470643 ttttctttctttagtacacgtttgagttttttctagactctaattatcctttttgtacataaattt 20470708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 51110061 - 51109999
Alignment:
Q  241 ccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    |||||||  ||||||||||||||||||||||||  |||| |||||||| |  |||||||||||||    
T  51110061 ccacaacaaaggagtgacaaattcaaatgacaccgttagataaatttcac--ctctttcacttaa 51109999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 24556735 - 24556864
Alignment:
Q  55 gtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattc 154  Q
    |||||||| |||| |||||||||| | || ||   ||||||  |||||||||||||||||| |||||| | ||||||  |  ||| |||||| || | ||    
T  24556735 gtacacgtatgagttttttctagactctaattccactttctcaacataaatttggtgctattaaaccaccatcaatt--tgaataatcacttaataagtc 24556832  T
Q  155 aatttgaaaagttatttcattgaaataatcac 186  Q
    ||||||||||  ||||||||| ||| ||||||    
T  24556833 aatttgaaaaactatttcatttaaagaatcac 24556864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 216
Target Start/End: Complemental strand, 21791704 - 21791523
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||| ||||||||| |||||||| ||||||| |||||||||| | ||||| ||||||||| ||||||||||| ||| ||||||||| | ||||  |    
T  21791704 gttacttctttttctttcatcagtacatgtttgagttttttctagactctagttctcctttctgaacataaatttgatgccatcaaaccaccttcaa--t 21791607  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccatt 216  Q
     | |||| |||||| |||| ||||||||||||||||||||||||||| ||||||   |||| || | |||| ||||||||||||    
T  21791606 gtgtataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttctttttcgcataaaccatt 21791523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 43154936 - 43154794
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    ||||||||| | || |||||| |||| |||||||||||| ||||| | |||| |||||||||||||| ||||||||||||| | ||||||  | |||| |    
T  43154936 ttttctttctttaggacacgtatgagttttttctagattctagttctactttttggacataaatttgatgctatcaaaccaccatcaatt--tgtataat 43154839  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||| |||| ||||||| ||||||||||||||| ||| ||||||    
T  43154838 cacttaatcagtcaatttaaaaagttatttcattaaaagaatcac 43154794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 35654114 - 35653986
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    ||||||| |||| |||||||||| | ||||| | |||||||||||||||| || ||||||||||||| | ||||||  | |||| |||||| |||| |||    
T  35654114 tacacgtatgagttttttctagactctagttctactttctggacataaatatgatgctatcaaaccaccatcaatt--tgtataatcacttaatcaatca 35654017  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| ||||||||||||| ||||||    
T  35654016 atttgaaaagctatttcattgaaagaatcac 35653986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 27632312 - 27632456
Alignment:
Q  41 attttctttcgtcagtacacgtttgagatttt-tctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatata 139  Q
    |||||||||| |||||||||||||||| |||| |||||||| ||||| |||||| || ||||||||||| | ||||||||||| ||  ||||  | ||||    
T  27632312 attttctttcttcagtacacgtttgagtttttttctagattctagttctcctttttgtacataaatttgatcctatcaaaccacccctaatt--tgtata 27632409  T
Q  140 gtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     |||||| || | ||||||||||||| || |||||||||| ||||||    
T  27632410 atcacttaattagtcaatttgaaaagctacttcattgaaagaatcac 27632456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 22423613 - 22423741
Alignment:
Q  55 gtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattc 154  Q
    |||||||| |||| |||||||||| | ||||| | ||||||||||||||||||| ||||||||||||| | ||||||  | |||  |||||| |||| ||    
T  22423613 gtacacgtatgagttttttctagactctagttctactttctggacataaatttgatgctatcaaaccaccatcaatt--tgtatgatcacttaatcaatc 22423710  T
Q  155 aatttgaaaagttatttcattgaaataatca 185  Q
    ||||||||||  ||||| ||||||| |||||    
T  22423711 aatttgaaaaactattttattgaaagaatca 22423741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 34982154 - 34982282
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||||| || ||||||||||||| |||| ||| |||||||||| |||||  | |||| |||||| |||| |||    
T  34982154 tacacgtttgagttttttctagactttagtttttctatctggacataaatctggtactaacaaaccatccccaatt--tgtataatcacttaatcagtca 34982251  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    ||| |||||  |||||| |||||| ||||||    
T  34982252 attggaaaaactatttcgttgaaagaatcac 34982282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 45172778 - 45172651
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| |||  ||||||||||||| |||| ||||||||||| ||| ||||  | |||| |||||| |||| |||    
T  45172778 tacacgtttgagttttttctagactttagttctccaatctggacataaatctggtactatcaaaccaccct-aatt--tgtataatcacttaatcagtca 45172682  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| |||||||| |||| ||||||    
T  45172681 atttgaaaagctatttcatggaaagaatcac 45172651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 10575615 - 10575486
Alignment:
Q  98 acataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttc 197  Q
    ||||||||||  ||||||||||||| |||||| || ||||   |||||| |||| |||||||  |||||||||||||||||||||||||   |||| ||     
T  10575615 acataaattttatgctatcaaaccaccctcaacttgtataa--tcacttaatcagtcaatttagaaagttatttcattgaaataatcacaacaatcattt 10575518  T
Q  198 catttttgcataaaccattcattttctccttt 229  Q
    | |||| ||||||||||||| ||||| |||||    
T  10575517 ctttttcgcataaaccattcgttttccccttt 10575486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 24449040 - 24449120
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaacca 122  Q
    ||||||||| ||||||||||| |||| |||||||||| | ||||| | ||||||||| ||||||||| |||||||||||||    
T  24449040 ttttctttcttcagtacacgtatgagttttttctagactctagttctactttctggatataaatttgatgctatcaaacca 24449120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 39 - 346
Target Start/End: Complemental strand, 32130941 - 32130647
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatat 138  Q
    |||||||||||| | ||||| |||||||| ||||||||||   ||||| | |||| || ||||||||  | | ||||||||||| ||  ||||| ||||     
T  32130941 tcattttctttctttagtacccgtttgagttttttctagacactagttcttctttttgtacataaatcggatcctatcaaaccacccctaatttgtataa 32130842  T
Q  139 agtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatt-tttgcataaaccattcattttctcctttttcccatt 237  Q
      |||||| |||| ||||||||||||  ||||||||||||| ||||||   |||| ||   || || ||||||||||||| ||||  ||||||           
T  32130841 --tcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccctttt------- 32130751  T
Q  238 tccccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaannnnnnnnatttcttgtcatgtttagaagttc 337  Q
       ||||||| ||||||||||||||||||| ||||| ||||| |||||||  | ||||||||||||||        | ||| | ||||||||||||||||    
T  32130750 ---ccacaacagaggagtgacaaattcaaacgacacaattagataaattt--catctctttcacttaattttttttaattcctttcatgtttagaagttc 32130656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 288
Target Start/End: Original strand, 5545261 - 5545479
Alignment:
Q  58 cacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaat 157  Q
    |||||||||| |||||||||| | || || | || |||||||||||||||| ||| ||||||||| |  |||||  | |||| |||||| |||  |||||    
T  5545261 cacgtttgagttttttctagactctaattcttctgtctggacataaatttgatgccatcaaaccaccaccaatt--tgtataatcacttaatcggtcaat 5545358  T
Q  158 ttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctcctttttcccatttccccacaacggaggagtga 257  Q
    ||| |||| ||||||||| ||| ||||||   |||| ||   |||| ||||||||||||| ||||| || ||          | ||||||||||||||||    
T  5545359 ttggaaagctatttcattaaaagaatcacaacaatcatttatttttcgcataaaccattcgttttccccctt----------ctcacaacggaggagtga 5545448  T
Q  258 caaattcaaatgacactattaggtaaatttc 288  Q
    |||||||||| |||||  |||||||||||||    
T  5545449 caaattcaaacgacaccgttaggtaaatttc 5545479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 19661295 - 19661430
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    ||||||||| | |||||||||||||| |||||||||| | ||||| || ||| || ||||||||  | | ||||||||||| ||  ||||  | |||| |    
T  19661295 ttttctttctttagtacacgtttgagttttttctagactctagttctcatttttgtacataaatcggatcctatcaaaccacccctaatt--tgtataat 19661392  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaa 179  Q
    ||||| |||| |||||||| |||| |||||||||||||    
T  19661393 cacttaatcagtcaatttggaaagctatttcattgaaa 19661430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 26328994 - 26328929
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    |||||||||||||| ||| ||||||||| |||||| ||||||||||||| | ||||||| ||||||    
T  26328994 cccacaacggaggaatgataaattcaaacgacacttttaggtaaatttcacctctcttttacttaa 26328929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 53011625 - 53011770
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatat 138  Q
    |||||||||||| | |||||||||||||| |||||||| | | || || |||||| || ||||||||  | | ||||||||||| ||  ||||  | |||    
T  53011625 tcattttctttctttagtacacgtttgagttttttctaaactctaattctcctttttgtacataaatcagatcctatcaaaccacccctaatt--tgtat 53011722  T
Q  139 agtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    | |||||| |||| |||||||| |||| ||||||||| ||| ||||||    
T  53011723 aatcacttaatcagtcaatttggaaagctatttcattaaaagaatcac 53011770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 55134138 - 55134266
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| ||||| |||| | ||||| || | |||||||||||||||||| |||||||||||    |||||    |||| | |||| |||| |||    
T  55134138 tacacgtttgagttttttgtagactttagttctcttatctggacataaatttggtactatcaaaccactaccaatt--ggtataatgacttaatcagtca 55134235  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| |||||||| |||| ||||||    
T  55134236 atttgaaaagctatttcatagaaagaatcac 55134266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 23426315 - 23426172
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatag 140  Q
    ||||||||| | |||| ||||||||| ||||| ||||| | ||||| |||||| || ||||||||  | | ||||||||||| |||| | || | ||||     
T  23426315 ttttctttctttagtatacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaacca-cctctaatt-tgtataa 23426218  T
Q  141 tcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||||| |||| |||||||| |||| ||||||||||||| ||||||    
T  23426217 tcacttaatcagtcaatttggaaagctatttcattgaaagaatcac 23426172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 51066386 - 51066324
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcactta 304  Q
    |||| |||| ||||||||||||| ||||||||||| ||||||||||||| |  ||||||||||||    
T  51066386 cccaaaacgaaggagtgacaaatccaaatgacactgttaggtaaatttcac--ctctttcactta 51066324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 11681892 - 11681748
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctgg-acataaatttggtgctatcaaaccatcctcaatttatatata 139  Q
    ||||||||| | |||||||||||||| ||||| ||||| | ||||| |||||| |   ||||||||  | | ||||||||||| ||  ||||| ||||      
T  11681892 ttttctttctttagtacacgtttgagtttttttctagactctagttctccttttttttacataaatcggatcctatcaaaccacccctaatttttataa- 11681794  T
Q  140 gtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     |||||| |||| |||||||| |||||||||||||||||| ||||||    
T  11681793 -tcacttaatcagtcaatttggaaagttatttcattgaaagaatcac 11681748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 11690171 - 11690027
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctgg-acataaatttggtgctatcaaaccatcctcaatttatatata 139  Q
    ||||||||| | |||||||||||||| ||||| ||||| | ||||| |||||| |   ||||||||  | | ||||||||||| ||  ||||| ||||      
T  11690171 ttttctttctttagtacacgtttgagtttttttctagactctagttctccttttttttacataaatcggatcctatcaaaccacccctaatttttataa- 11690073  T
Q  140 gtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     |||||| |||| |||||||| |||||||||||||||||| ||||||    
T  11690072 -tcacttaatcagtcaatttggaaagttatttcattgaaagaatcac 11690027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 16072506 - 16072645
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| || ||||||||||||| ||||| |||   | ||| | |||||| || ||||||||||| | ||||||||||||||  ||||  | ||    
T  16072506 tcattttctttcttcggtacacgtttgagtttttttctaagctctagatctcctttttgtacataaatttgatcctatcaaaccatccctaatt--tgta 16072603  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaa 179  Q
    || ||| || |||| ||||||||||||  ||||||| |||||    
T  16072604 taatcatttaatcagtcaatttgaaaaactatttcaatgaaa 16072645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 26329187 - 26329085
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||| ||||||||| |  ||||||||||||  |||||||||| | || || |||||  ||||||||||| || ||||| ||||||| |  ||||||    
T  26329187 gttacttctttttctttctttggtacacgtttgaattttttctagactgtaattctcctt--tggacataaatctgatgctaccaaaccacctccaattt 26329090  T
Q  133 atata 137  Q
    |||||    
T  26329089 atata 26329085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 44478144 - 44478206
Alignment:
Q  241 ccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||||||| ||||||||||||||||||| |||||  |||| |||||||| |  |||||||||||||    
T  44478144 ccacaacagaggagtgacaaattcaaacgacaccgttagataaatttcac--ctctttcacttaa 44478206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 39081314 - 39081449
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    |||| |||| ||||||||||| |||| |||||||||| | ||||||| ||||||||||||||||||| ||||||||||||| | ||||||  | |||| |    
T  39081314 ttttttttcttcagtacacgtatgagttttttctagactctagttttactttctggacataaatttgatgctatcaaaccaccatcaatt--tgtataat 39081411  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaa 179  Q
    ||||| |||| ||||||||||||| |||||||||||||    
T  39081412 cacttaatcagtcaatttgaaaagctatttcattgaaa 39081449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 18916188 - 18916060
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| | |  ||||||||||||| |||| |||||||||||||| |||||  | |||| |||||| |||| |||    
T  18916188 tacacgtttgaggtttttctagactttagttcttcaatctggacataaatctggtactatcaaaccatccccaatt--tgtataatcacttaatcaatca 18916091  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| ||||||| ||||| ||||||    
T  18916090 atttgaaaagctatttcactgaaagaatcac 18916060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 229
Target Start/End: Original strand, 1418836 - 1419010
Alignment:
Q  52 tcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatca 151  Q
    ||||||||||| |||| |||||||||| | ||||| | |||| | ||||||| |||| ||||||||||||| | ||||||| ||||   |||||| ||||    
T  1418836 tcagtacacgtatgagttttttctagactctagttctactttttagacataa-tttgatgctatcaaaccaccatcaatttgtataa--tcacttaatca 1418932  T
Q  152 ttcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
     |||||||| |||| ||||||||||||| ||||||   |||  || | |||| |||||||| ||||||||| ||||||    
T  1418933 gtcaatttgtaaagctatttcattgaaagaatcacaacaattatttctttttcgcataaactattcattttttccttt 1419010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 36060062 - 36059874
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||| ||||||||| |  |||| ||| | || |||||||||| | ||||| | |||| | |||| ||||||| ||||||||||||| | ||||||     
T  36060062 gttacttctttttctttctttggtacgcgtataagttttttctagactctagttctactttttagacaaaaatttgatgctatcaaaccaccatcaatt- 36059964  T
Q  133 atatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttc 223  Q
     | |||| |||||| |||| | ||||| ||||| ||||||||||||| || |||   |||| || | |||||||||||||||||| |||||    
T  36059963 -tgtataatcacttaatcagttaatttaaaaagctatttcattgaaagaaccacaacaatcatttcttttttgcataaaccattcgttttc 36059874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 38985842 - 38985715
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||| | | || || |||| |||||||||||||||||| ||||||||||| |  |||||| ||||   ||| || |||| |||    
T  38985842 tacacgtttgagttttttctaaacttta-ttctcctatctggacataaatttggtactatcaaaccacctccaatttgtataa--tcatttaatcaatca 38985746  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| ||||||||||||| ||||||    
T  38985745 atttgaaaagctatttcattgaaagaatcac 38985715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 229
Target Start/End: Complemental strand, 18173073 - 18172903
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | || || |||| | ||||||||||| |||| ||||||||||| ||  ||||| ||||   |||||| |||| |||    
T  18173073 tacacgtttgagttttttctagacttta-ttctcctatatggacataaatctggtactatcaaaccacccctaatttgtataa--tcacttaatcactca 18172977  T
Q  156 atttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    |||||||||| |||||||| |||| ||||||   |||| || | ||||  |||||||||||| ||||| |||||    
T  18172976 atttgaaaagctatttcatcgaaagaatcacaacaatcatttctttttcacataaaccattcgttttccccttt 18172903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 19367568 - 19367425
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatag 140  Q
    ||||||||| | |||||||||||||| ||||| ||||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||| ||||       
T  19367568 ttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggattctatcaaaccacccctaatttgtataa-- 19367471  T
Q  141 tcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  19367470 tcacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 19367425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 2063721 - 2063863
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    ||||||||| || ||| ||||||||| ||||| |||| | |||||||||||| || |||||||| |  | ||||||||||| ||  ||||  | |||| |    
T  2063721 ttttctttcttcggtatacgtttgagttttttttagactctagttttcctttttgtacataaatataatcctatcaaaccacccctaatt--tgtataat 2063818  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||| |||| |||||||| |||| ||||||||||||| ||||||    
T  2063819 cacttaatcagtcaatttggaaagctatttcattgaaagaatcac 2063863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 34062004 - 34061862
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    ||||||||| ||||||||||| |||| ||||| |||| ||||||| | |||| || |||||||| |||| ||||||||||| ||  ||||  | |||  |    
T  34062004 ttttctttcttcagtacacgtatgagttttttttagactatagttcttctttttgtacataaatctggtcctatcaaaccacccataatt--tgtatgat 34061907  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     |||| |||| |||||||| |||| ||||||||||||| ||||||    
T  34061906 tacttaatcagtcaatttggaaagctatttcattgaaagaatcac 34061862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 1226400 - 1226286
Alignment:
Q  55 gtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattc 154  Q
    ||||||||||||| |||||||||| | || || ||||||  |||||||||| || ||||| ||||||| ||||||||||  |||| |||||  ||||  |    
T  1226400 gtacacgtttgagttttttctagactctaattctccttt--ggacataaatctgatgctaccaaaccaccctcaattta--tataatcactcaatcagac 1226305  T
Q  155 aatttgaaaagttatttca 173  Q
    |||||||||||||||||||    
T  1226304 aatttgaaaagttatttca 1226286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 15457430 - 15457558
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | |||||  | | || |||||||||| |||| ||||||||| | || |||||| ||||   |||||| |||| |||    
T  15457430 tacacgtttgagttttttctagactttagttcacttatccggacataaatctggtactatcaaactacccccaatttgtataa--tcacttaatcagtca 15457527  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| ||||| ||||||| ||||||    
T  15457528 atttgaaaagctattttattgaaagaatcac 15457558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 17117771 - 17117651
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||  |||||||||||| ||| | |||| ||||||||||||| |||| ||||||||||| || |||||| ||||          |||| |||    
T  17117771 tacacgtttgaattttttctagattttagctctcctatctggacataaatctggtactatcaaaccacccccaatttgtata----------atcagtca 17117682  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| ||||||||||||| ||||||    
T  17117681 atttgaaaagctatttcattgaaagaatcac 17117651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 29480737 - 29480643
Alignment:
Q  90 ctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||||||||||||||||| |||||| |||||| | |||||||  ||| |  |||||  ||| |||||||||||| |||||||||||||| ||||||    
T  29480737 ctttctggacataaatttgatgctattaaaccaccatcaatttgaataaa--cacttattcagtcaatttgaaaaattatttcattgaaagaatcac 29480643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 42411706 - 42411564
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    ||||||||| | |||||||||||||| |||||||||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||  | |||| |    
T  42411706 ttttctttctttagtacacgtttgagttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatt--tgtataat 42411609  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||| || | |||||||| |||| ||||||||| ||| ||||||    
T  42411608 cacttaattagtcaatttggaaagctatttcatttaaagaatcac 42411564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 13997244 - 13997409
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    ||||||| |||| |||| ||||| | ||||||  ||||||||||||||||||| ||||||  ||||| | ||||||  |  ||| |||||| || | |||    
T  13997244 tacacgtatgagtttttcctagactctagtttcactttctggacataaatttgatgctattgaaccaccgtcaatt--tgaataatcacttaatgagtca 13997341  T
Q  156 atttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttc 223  Q
    |||||||||  ||||||||||||| ||||||   |||  || | |||| ||||||||||||| |||||    
T  13997342 atttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttc 13997409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 21747364 - 21747236
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| | || |||| |||||||| |||| ||||||||||| || |||||  | |||| |||||| |||| |||    
T  21747364 tacacgtttgaggtttttctagactttagttcttctatctgaacataaatctggtactatcaaaccacccccaatt--tgtataatcacttaatcagtca 21747267  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||| |||   ||| ||||||||| ||||||    
T  21747266 atttaaaatactatgtcattgaaagaatcac 21747236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 27302661 - 27302490
Alignment:
Q  57 acacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaa 156  Q
    |||| |||||| |||||||||| | || || | || |||||||| ||||| | ||||| |||| || ||||||||| ||||   |||||| |||  ||||    
T  27302661 acacatttgagttttttctagactctaattcttctgtctggacaaaaattcgatgctaccaaatcaccctcaatttgtataa--tcacttaatcggtcaa 27302564  T
Q  157 tttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctcctttt 230  Q
    ||||||||| ||| ||||| ||| ||||||   |||| ||   |||| ||||||||||||||||||| ||||||    
T  27302563 tttgaaaagctatatcattaaaagaatcacaacaatcatttatttttcgcataaaccattcattttcacctttt 27302490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 13001739 - 13001803
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcactta 304  Q
    ||||||||  ||||||||||||| |||| |||||| || |||||||| | |||||||||||||||    
T  13001739 cccacaacaaaggagtgacaaatccaaacgacactgttcggtaaattgcacttctctttcactta 13001803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 26151897 - 26151753
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagattttt-ctaga-ttatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatata 139  Q
    ||||||||| | |||| ||||||||| ||||| ||||| || ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||| ||||      
T  26151897 ttttctttctttagtatacgtttgagtttttttctagacttctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataa- 26151799  T
Q  140 gtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     |||||| |||| |||||||| |||| ||||||||||||| ||||||    
T  26151798 -tcacttaatcagtcaatttggaaagctatttcattgaaagaatcac 26151753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 38599371 - 38599459
Alignment:
Q  95 tggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatca 185  Q
    |||| ||||||||| |||||||||| |||  ||||||| ||||   |||||| |||| ||||||||||||  ||||||||||||| |||||    
T  38599371 tggatataaatttgatgctatcaaatcattatcaatttgtataa--tcacttaatcaatcaatttgaaaaactatttcattgaaagaatca 38599459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 6530667 - 6530717
Alignment:
Q  136 tatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||| |||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  6530667 tataatcacttaatcagtcaatttgaaaaggtatttcattgaaagaatcac 6530717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 45618892 - 45619034
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctaga-ttatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatag 140  Q
    ||||||||| | |||| ||||||||| |||||||||| || ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||| ||||       
T  45618892 ttttctttctttagtatacgtttgagttttttctagacttctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataa-- 45618989  T
Q  141 tcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||||| |||| |||||||| || | ||||||||||||| ||||||    
T  45618990 tcacttaatcagtcaatttggaa-gctatttcattgaaagaatcac 45619034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 1419034 - 1419075
Alignment:
Q  264 caaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||||||||||  ||||||||||||| ||||||||||||||||    
T  1419034 caaatgacaccgttaggtaaatttcacttctctttcacttaa 1419075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 2063909 - 2063971
Alignment:
Q  241 ccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||||||| ||||||||||||||||||| |||||  |||| |||||||| |  |||||||||||||    
T  2063909 ccacaacagaggagtgacaaattcaaacgacaccgttagataaatttcac--ctctttcacttaa 2063971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 31273128 - 31273063
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    |||||||| ||  |||||||||| |||| |||||  ||||||||||||| |||||||||| |||||    
T  31273128 cccacaacagaaaagtgacaaatccaaacgacacagttaggtaaatttcacttctctttcgcttaa 31273063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 32186307 - 32186218
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaacca 122  Q
    |||||||| ||||||||| || | |||  | |||| |||||||||| | ||||| | |||| | |||||||||||| |||||||||||||    
T  32186307 gttacttctttttctttcttcggcacatatatgagttttttctagactctagttctactttttagacataaatttgatgctatcaaacca 32186218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 1226053 - 1226021
Alignment:
Q  364 agagagtcaagcctcctatttcataggaacggc 396  Q
    |||||||| ||||||||||||||||||||||||    
T  1226053 agagagtcgagcctcctatttcataggaacggc 1226021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 13020337 - 13020481
Alignment:
Q  42 ttttctttcgtcagtacacgtttgag--atttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatata 139  Q
    ||||||||| | ||||||||||||||   |||||||||| | ||||| || ||| || ||||||||  | | ||||||||||| ||  ||||  | ||||    
T  13020337 ttttctttctttagtacacgtttgagttttttttctagactctagttctcttttttgtacataaatcggatcctatcaaaccacccctaatt--tgtata 13020434  T
Q  140 gtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     |||||| |||| |||||||| |||| ||||||||| ||| ||||||    
T  13020435 atcacttaatcagtcaatttggaaagctatttcatttaaagaatcac 13020481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 13020528 - 13020589
Alignment:
Q  242 cacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    |||||| ||||||||| |||||||||||||||  |||| |||||||| |  |||||||||||||    
T  13020528 cacaacagaggagtgaaaaattcaaatgacaccgttagataaatttcac--ctctttcacttaa 13020589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 1690767 - 1690639
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||| ||| ||||| |||| | ||||||||||| |||| ||||||||||| |  |||||| ||||   ||||||||||| |||    
T  1690767 tacacgtttgagttttttctaaattttagttctcctatttggacataaatctggtactatcaaaccaccaccaatttgtataa--tcacttgatcaatca 1690670  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    ||||||||| |||||||||||||| ||||||    
T  1690669 atttgaaaatttatttcattgaaagaatcac 1690639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 19231529 - 19231670
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    |||| |||| |||| ||||||||||| |||||||||| | ||||| | |||||||||||||||| |||||||||||||| | | ||||||| ||||   |    
T  19231529 ttttttttcttcaggacacgtttgagttttttctagagtttagttctactttctggacataaatctggtgctatcaaactaccttcaatttgtata---t 19231625  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||| |||| ||||||||||||| |||  |||||||| ||||||    
T  19231626 cacttaatcaatcaatttgaaaagctatgacattgaaaaaatcac 19231670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 6754119 - 6754264
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatat 138  Q
    |||||||||||| | ||||| |||||||| |||||||||||| ||||| || ||| || ||||||||  | | ||||||||||||||  ||||  | |||    
T  6754119 tcattttctttctttagtacgcgtttgagttttttctagattctagttctcttttttgtacataaatcggatcctatcaaaccatccctaatt--tgtat 6754216  T
Q  139 agtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||||||| |||| |||||||| |||| ||||||||||||| ||||||    
T  6754217 agtcacttaatcagtcaatttggaaagctatttcattgaaagaatcac 6754264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 2618268 - 2618413
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatat 138  Q
    |||||||||||| | |||||||||||||| |||||||||| | ||||| || ||| || ||||||||  | | ||||||||||| ||  ||||  | |||    
T  2618268 tcattttctttctttagtacacgtttgagttttttctagactttagttctcttttttgtacataaatcggatcctatcaaaccacccctaatt--tgtat 2618365  T
Q  139 agtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    | |||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  2618366 aatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 2618413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 6360673 - 6360817
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatat 138  Q
    |||||||||||| | |||||||||||||| |||||||||| | ||||| || ||| || ||||||||  | | ||||||||||| ||| ||||  | |||    
T  6360673 tcattttctttctttagtacacgtttgagttttttctagactctagttctcttttttgcacataaatcggatcctatcaaaccacccttaatt--tgtat 6360770  T
Q  139 agtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    | |||||| |||| |||||||||||||||| |||||||||| ||||||    
T  6360771 aatcacttaatcagtcaatttgaaaagtta-ttcattgaaagaatcac 6360817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 3748689 - 3748574
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagtta 168  Q
    ||||| |||||| ||||| | |||| |||||||||||||| ||||||||||||  | ||||||| ||||   |||||| |||| ||||||||||||| ||    
T  3748689 tttttttagattctagttctactttttggacataaatttgatgctatcaaaccgccatcaatttgtataa--tcacttaatcaatcaatttgaaaagcta 3748592  T
Q  169 tttcattgaaataatcac 186  Q
    ||||||||||| ||||||    
T  3748591 tttcattgaaagaatcac 3748574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 30915487 - 30915372
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagtta 168  Q
    |||||||||| | ||||| | ||||||||||||||||||| ||||||||||||  | ||||||  | |||| | |||| |||| ||||||||||||| ||    
T  30915487 tttttctagactctagttctactttctggacataaatttgatgctatcaaacccccatcaatt--tgtataattacttaatcagtcaatttgaaaagcta 30915390  T
Q  169 tttcattgaaataatcac 186  Q
    ||| ||||||| ||||||    
T  30915389 tttaattgaaagaatcac 30915372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 12614852 - 12614722
Alignment:
Q  54 agtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcatt 153  Q
    |||||||||||||| ||||| |||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||| ||||   |||||| |||| |    
T  12614852 agtacacgtttgagttttttttagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataa--tcacttaatcagt 12614755  T
Q  154 caatttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||||| ||||||||||||| ||||||    
T  12614754 caatttgaaaagctatttcattgaaagaatcac 12614722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 29308601 - 29308473
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||| | | ||||||| || |||||||||||||||||| |||||||||||    |||||    |||| | |||| |||| |||    
T  29308601 tacacgtttgagttttttctaaactttagtttttctatctggacataaatttggtactatcaaaccactaccaatt--ggtataatgacttaatcagtca 29308504  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||  |||||||||||| |||||||    
T  29308503 atttgaaaaactatttcattgaagtaatcac 29308473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 31860933 - 31861059
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| | || ||||||||||||| ||||  |||||||||| || |||||| ||||   | |||| |||| |||    
T  31860933 tacacgtttgaggtttttctagactttagttcttctatctggacataaatctggta-tatcaaaccaccc-caatttgtataa--ttacttaatcagtca 31861028  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||| ||||||||||||| ||||||    
T  31861029 atttgaaaagctatttcattgaaagaatcac 31861059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 1093169 - 1093108
Alignment:
Q  61 gtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaacca 122  Q
    ||||||| |||||||||| | ||||| |||| |||||||||||||||||| |||||||||||    
T  1093169 gtttgagttttttctagactttagttctcctatctggacataaatttggtactatcaaacca 1093108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 11088463 - 11088565
Alignment:
Q  33 gttacttcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||||||| ||||||||  || ||||||||||||| |||||||||| | || || |||||  ||||||||||| || ||||| ||||||| || ||||||    
T  11088463 gttacttctttttcttttttcggtacacgtttgagttttttctagactctaattctcctt--tggacataaatctgatgctaccaaaccacccccaattt 11088560  T
Q  133 atata 137  Q
    |||||    
T  11088561 atata 11088565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 29401148 - 29401198
Alignment:
Q  136 tatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| ||||||    
T  29401148 tataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcac 29401198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 3515002 - 3514856
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| | |||||||||||||| ||||| ||| | | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||| ||||    
T  3515002 tcattttctttctttagtacacgtttgagtttttttctaaactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttgtata 3514903  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
       |||| | ||||||||||||| |||| ||| ||||||||| ||||||    
T  3514902 a--tcacgtaatcattcaatttggaaagctatatcattgaaagaatcac 3514856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 6294208 - 6294285
Alignment:
Q  55 gtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    ||||| || |||| |||||||||| | ||||| | |||| ||| |||||||||| ||||||||||||||| |||||||    
T  6294208 gtacatgtatgagttttttctagactctagttctactttttgggcataaatttgatgctatcaaaccatcatcaattt 6294285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 628151 - 628101
Alignment:
Q  136 tatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||| |||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  628151 tataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 628101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 7525303 - 7525172
Alignment:
Q  54 agtacacgtttgag-atttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcat 152  Q
    ||||||||||||||  |||||||||| | ||||| ||| || || ||||||||  | | ||||||||||| ||  ||||  | |||| |||||| ||||     
T  7525303 agtacacgtttgagtttttttctagactctagttctccattttgtacataaatcggatcctatcaaaccacccataatt--tgtataatcacttaatcag 7525206  T
Q  153 tcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||||||| |||||||||| ||||||| ||||||    
T  7525205 tcaatttggaaagttattttattgaaagaatcac 7525172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 57600 - 57746
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgag-atttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| || |||||||||||||  ||||| || | | ||||| |||||| || |||||||| || | ||||||||||| ||  ||||  | ||    
T  57600 tcattttctttcttcggtacacgtttgagtttttttttaaactctagttctcctttttgtacataaatctgatcctatcaaaccacccataatt--tgta 57697  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    || |||||| |||| |||||||  |||| ||||||||| ||| ||||||    
T  57698 taatcacttaatcagtcaatttagaaagctatttcattcaaagaatcac 57746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 7341130 - 7341215
Alignment:
Q  47 tttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaattt 132  Q
    |||| ||||||||| | |||| |||||||||| | |||||   ||||||||||||||||||| || ||| |||||| | |||||||    
T  7341130 tttcttcagtacacatatgagttttttctagactctagttccactttctggacataaatttgatgttattaaaccaccgtcaattt 7341215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 31258606 - 31258541
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaattt 107  Q
    ||||||||| | |||||||||||||| |||||||||| | || || |||||| || ||||||||||    
T  31258606 ttttctttctttagtacacgtttgagttttttctagactctaattatcctttttgtacataaattt 31258541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 6360863 - 6360924
Alignment:
Q  241 ccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcactta 304  Q
    ||||||| ||||||||||||||||||| |||||  |||| |||||||  | |||||||||||||    
T  6360863 ccacaacagaggagtgacaaattcaaacgacaccgttagataaattt--catctctttcactta 6360924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 42009395 - 42009268
Alignment:
Q  57 acacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaa 156  Q
    |||||| |||| ||||| |||| | ||||| | ||||||||||||||||||| ||||||||||||| | ||||||  | |||| |||||| |||| ||||    
T  42009395 acacgtatgagttttttttagactttagttctactttctggacataaatttgatgctatcaaaccaccatcaatt--tgtataatcacttaatcagtcaa 42009298  T
Q  157 tttgaaaagttatttcattgaaataatcac 186  Q
    ||| ||||||||||||||||||| ||||||    
T  42009297 tttaaaaagttatttcattgaaagaatcac 42009268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 7767006 - 7767121
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagtta 168  Q
    |||||||||| |  |||| | ||||||||||||||||||| ||||||||||| | | ||||||| ||||   |||||| |||| ||||||||||||| ||    
T  7767006 tttttctagactccagttctactttctggacataaatttgatgctatcaaacaaccatcaatttgtataa--tcacttaatcagtcaatttgaaaagcta 7767103  T
Q  169 tttcattgaaataatcac 186  Q
    ||||||||||| ||||||    
T  7767104 tttcattgaaagaatcac 7767121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 229
Target Start/End: Complemental strand, 36538320 - 36538149
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    ||||||| |||| |||||||| | | ||||| | |||| |||||||||| ||| ||||||||||||| | ||||||  | |||| |||||| |||| |||    
T  36538320 tacacgtatgagttttttctaaactctagttatactttatggacataaacttgatgctatcaaaccaccatcaatt--tgtataatcacttaatcagtca 36538223  T
Q  156 atttgaaaagttatttcattgaaataatcacctaaatcgttccatttttgcataaaccattcattttctccttt 229  Q
    |||||||||  ||||||||||||| ||||||   |||  || | |||| ||||||||||||| ||||| |||||    
T  36538222 atttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccccttt 36538149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 43905977 - 43905862
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| ||||| |||| | ||||| |||| ||||||||||||| |||| ||||||||| | ||||||||  | |||| |||||  |||| |||    
T  43905977 tacacgtttgaggtttttttagactttagttctcctatctggacataaatctggtactatcaaactaccctcaatt--tgtataatcactcaatcagtca 43905880  T
Q  156 atttgaaaagttatttca 173  Q
    ||||||||||||||||||    
T  43905879 atttgaaaagttatttca 43905862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 29387906 - 29387760
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttct-agattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| | |||||||||||||| ||||| | ||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||| ||||    
T  29387906 tcattttctttctttagtacacgtttgagtttttttttagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtata 29387807  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
       |||||| |||| ||||||||||||||||||||||||||| ||||||    
T  29387806 a--tcacttaatcaatcaatttgaaaagttatttcattgaaagaatcac 29387760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 186
Target Start/End: Complemental strand, 48627163 - 48627035
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||||| |||||||||| | ||||| || | ||||||||||||| || | |||||| |||| |  |||||| ||||   ||||||||||| |||    
T  48627163 tacacgtttgagttttttctagactttagttctcatatctggacataaatctgatactatcagaccaccgccaatttgtataa--tcacttgatcagtca 48627066  T
Q  156 atttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||  ||||||||||||| ||||||    
T  48627065 atttgaaaatctatttcattgaaagaatcac 48627035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 54430468 - 54430599
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    ||||||||  || ||||||||||||| |||||||||  | ||||| |||||| || |||||||| || || |||||||||| ||  ||||  | |||| |    
T  54430468 ttttcttttttcggtacacgtttgagttttttctaggctctagttctcctttttgtacataaatctgatgttatcaaaccacccctaatt--tgtataat 54430565  T
Q  142 cacttgatcattcaatttgaaaagttatttcatt 175  Q
    ||||| |||| |||||||||||||||||||||||    
T  54430566 cacttaatcagtcaatttgaaaagttatttcatt 54430599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 23164720 - 23164578
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    ||||||||  |||||||||||||||| |||||||||| | ||||| |||||| || |||||||| || | ||||||||||| ||  ||||  | |||| |    
T  23164720 ttttcttttttcagtacacgtttgagttttttctagactctagttctcctttttgtacataaatctgatcctatcaaaccacccctaatt--tgtataat 23164623  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||| |||| |||||||| ||   ||||||||||||| ||||||    
T  23164622 cacttaatcaatcaatttggaagtctatttcattgaaagaatcac 23164578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 27303103 - 27303245
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    |||| |||| |||| |||||| || | |||||||||| | || || | |||| |||||||||||||| ||| || |||||| | ||||||| ||||   |    
T  27303103 ttttttttcttcaggacacgtatgtgttttttctagactctacttctactttatggacataaatttgatgccatgaaaccaccatcaatttgtataa--t 27303200  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  27303201 cacttaatcaatcaatttgaaaagctatttcattgaaagaatcac 27303245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 28132887 - 28132741
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatata 137  Q
    |||||||||||| | ||||||| |||||||||||| ||||| | ||||| |||||| || ||||||||  | | |||||||| || ||| ||||| ||||    
T  28132887 tcattttctttctttagtacacatttgagattttttctagactctagttctcctttttgtacataaatcagatcctatcaaatcacccttaatttgtata 28132788  T
Q  138 tagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
       |||||| |||| |||||||| |||| ||||||||||||| ||||||    
T  28132787 a--tcacttaatcagtcaatttggaaagctatttcattgaaagaatcac 28132741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 51939704 - 51939562
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagt 141  Q
    ||||||||| | ||| |||||||||| |||||||||| | ||||| || ||| || ||||||||  | | ||||||||||| ||  ||||| ||||   |    
T  51939704 ttttctttctttagtccacgtttgagttttttctagactctagttctcttttttgtacataaatcagatcctatcaaaccacccctaatttgtataa--t 51939607  T
Q  142 cacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  51939606 cacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 51939562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 18408104 - 18408249
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatat 138  Q
    |||||||||||| | |||||||||||||| |||||||||| | ||||| || ||| || ||||||||  | | ||||||||||| ||  ||||  | |||    
T  18408104 tcattttctttctttagtacacgtttgagttttttctagactttagttctcatttttgtacataaatcggatcctatcaaaccacccctaatt--tgtat 18408201  T
Q  139 agtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    | |||||| |||| ||||||||||||| || | |||||||| ||||||    
T  18408202 aatcacttaatcagtcaatttgaaaagctaatccattgaaagaatcac 18408249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 23067878 - 23067731
Alignment:
Q  39 tcattttctttcgtcagtacacgtttgagattttt--ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatat 136  Q
    |||||||||||| | |||||||||||||| |||||  ||||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||| |||    
T  23067878 tcattttctttctttagtacacgtttgagttttttttctagactttagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtat 23067779  T
Q  137 atagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |   |||||| | || ||||||||||||||||||||||| ||| ||||||    
T  23067778 aa--tcacttcaccagtcaatttgaaaagttatttcatttaaagaatcac 23067731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 25599236 - 25599092
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagatttttct--agattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatata 139  Q
    ||||||||| |||||||| ||||||| ||||| |  ||| | ||||| |||||| || |||||||| || | ||||||||||| |||| | || ||||||    
T  25599236 ttttctttcttcagtacaggtttgagttttttttttagactctagttctcctttttgtacataaatctgattctatcaaacca-cctctaatt-tatata 25599139  T
Q  140 gtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
     |||||| |||| ||||||||||||  ||||||||||||| ||||||    
T  25599138 atcacttaatcagtcaatttgaaaaactatttcattgaaagaatcac 25599092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 8364087 - 8364230
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatag 140  Q
    ||||||||| | |||||||||||||| ||||| ||||| | | ||| |||||| || ||||||||  | | ||||||||||| ||  ||||| ||||       
T  8364087 ttttctttctttagtacacgtttgagtttttttctagactcttgttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataa-- 8364184  T
Q  141 tcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||||| |||| |||||||| |||||||||||||||||| ||||||    
T  8364185 tcacttaatcagtcaatttggaaagttatttcattgaaagaatcac 8364230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 41707204 - 41707061
Alignment:
Q  42 ttttctttcgtcagtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatag 140  Q
    ||||||||| | |||||||||||||| ||||| ||||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  |||||  |||       
T  41707204 ttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgcataa-- 41707107  T
Q  141 tcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  41707106 tcacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 41707061  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 50677435 - 50677320
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagtta 168  Q
    |||| ||||| | ||||| | ||||||||||| ||||||| || |||||||||| | ||||||| ||||   |||||| |||| ||||||||||||  ||    
T  50677435 ttttcctagactttagttatactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataa--tcacttaatcagtcaatttgaaaaacta 50677338  T
Q  169 tttcattgaaataatcac 186  Q
    ||||||||||| ||||||    
T  50677337 tttcattgaaacaatcac 50677320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 1649978 - 1649844
Alignment:
Q  43 tttctttcgtcagtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtc 142  Q
    |||||||| || |||||| ||| || ||| |||| | | ||||| || ||||| ||||||||| ||||||||||||| || || |||||  | |||| ||    
T  1649978 tttctttcatcggtacacatttaagttttgtctaaaatctagttctcttttctagacataaatctggtgctatcaaatcacccccaatt--tgtataatc 1649881  T
Q  143 acttgatcattcaatttgaaaagttatttcattgaaa 179  Q
    |||| |||||||||||||||||  ||||||| |||||    
T  1649880 acttaatcattcaatttgaaaatctatttcactgaaa 1649844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 21784920 - 21784790
Alignment:
Q  54 agtacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcatt 153  Q
    |||||||||||||| |||||||||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||  | |||| |||||| |||| |    
T  21784920 agtacacgtttgagttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatt--tgtataatcacttaatcagt 21784823  T
Q  154 caatttgaaaagttatttcattgaaataatcac 186  Q
     |||||| |||| ||||||||||||| ||||||    
T  21784822 taatttggaaagctatttcattgaaagaatcac 21784790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 46904707 - 46904800
Alignment:
Q  91 tttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    |||||||||||| ||||| ||||||||||||| | ||||||  | |||| |||||| |||| ||||||| ||||  ||||||||||||| ||||||    
T  46904707 tttctggacatagatttgatgctatcaaaccaccatcaatt--tgtataatcacttaatcagtcaatttaaaaaactatttcattgaaagaatcac 46904800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 15987302 - 15987335
Alignment:
Q  240 cccacaacggaggagtgacaaattcaaatgacac 273  Q
    ||||||||||||||||||||||||||||||||||    
T  15987302 cccacaacggaggagtgacaaattcaaatgacac 15987335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 21596265 - 21596382
Alignment:
Q  56 tacacgtttgagatttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattca 155  Q
    |||||||||| | |||||||||| | || || ||||||||||||||||||  | |||||||||||||  | |||||  | |||| |||||| |||| ||     
T  21596265 tacacgtttgcgttttttctagactctaattctcctttctggacataaatcagatgctatcaaaccactcccaatt--tgtataatcacttaatcagtcg 21596362  T
Q  156 atttgaaaagttatttcatt 175  Q
    ||||| |||| |||||||||    
T  21596363 atttggaaagctatttcatt 21596382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 46791848 - 46791703
Alignment:
Q  40 cattttctttcgtcagtacacgtttgag-atttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatat 138  Q
    ||||||||||| | ||||||||||||||  |||||||||| | ||||| |||||| || ||||||||  | | ||||||||||| |||| | || | |||    
T  46791848 cattttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaacca-cctctaatt-tgtat 46791751  T
Q  139 agtcacttgatcattcaatttgaaaagttatttcattgaaataatcac 186  Q
    | |||||| |||| |||||||| |||  |||||||||| || ||||||    
T  46791750 aatcacttaatcagtcaatttggaaaactatttcattgcaagaatcac 46791703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 51146881 - 51146995
Alignment:
Q  69 tttttctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcattcaatttgaaaagtta 168  Q
    |||||||||||| |||||   |||| |||||||||||||| |||||| |||||| | |||||||  |||   |||||| |||| ||||||| ||||  ||    
T  51146881 tttttctagattctagttccactttttggacataaatttgatgctattaaaccaccatcaatttgaata---tcacttaatcagtcaatttaaaaaacta 51146977  T
Q  169 tttcattgaaataatcac 186  Q
    ||| ||||||| ||||||    
T  51146978 ttttattgaaagaatcac 51146995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 21596437 - 21596542
Alignment:
Q  241 ccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaannnnnnnnatttcttgtcatgtttagaagttcttc 340  Q
    |||||| |||||||||||||| ||||| ||| || |||||||||||||  || ||||||| ||||        ||| | | ||||||||||||||||||     
T  21596437 ccacaatggaggagtgacaaaatcaaacgacgctgttaggtaaatttcatttttctttcatttaattctttttattacatttcatgtttagaagttcttt 21596536  T
Q  341 tgattc 346  Q
    ||||||    
T  21596537 tgattc 21596542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 25599047 - 25598985
Alignment:
Q  241 ccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||||||| ||||||||||||||||||| |||||  |||| |||||||| |  |||||||||||||    
T  25599047 ccacaacagaggagtgacaaattcaaacgacaccgttagataaatttcac--ctctttcacttaa 25598985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 27110832 - 27110770
Alignment:
Q  241 ccacaacggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||||||| ||||||||||||||||||| |||||  |||| |||||||| |  |||||||||||||    
T  27110832 ccacaacagaggagtgacaaattcaaacgacaccgttagataaatttcac--ctctttcacttaa 27110770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 27303294 - 27303351
Alignment:
Q  246 acggaggagtgacaaattcaaatgacactattaggtaaatttcccttctctttcacttaa 305  Q
    ||| ||||||||||  |||||| ||||| |||||||||||||| | ||||||||||||||    
T  27303294 acgtaggagtgaca--ttcaaacgacaccattaggtaaatttcacctctctttcacttaa 27303351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 16637 - 16768
Alignment:
Q  54 agtacacgtttgagattttt-ctagattatagttttcctttctggacataaatttggtgctatcaaaccatcctcaatttatatatagtcacttgatcat 152  Q
    |||||||||||||| ||||| ||||| | ||||| |||||| || ||||||||  | | ||||||||||| ||  ||||| ||||   |||||| ||||     
T  16637 agtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataa--tcacttaatcag 16734  T
Q  153 tcaatttgaaaagttatttcattgaaataatcac 186  Q
    ||||||||||||| ||||||||||||| ||||||    
T  16735 tcaatttgaaaagctatttcattgaaagaatcac 16768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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