View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_19 (Length: 411)
Name: NF10260_low_19
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 93 - 389
Target Start/End: Complemental strand, 41348628 - 41348333
Alignment:
| Q |
93 |
agtacaacacagataagctaaccgatagtataaaaaataagtgcaataaaacagaattttattggcttctaatttctttcattagagctgattttacctg |
192 |
Q |
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| T |
41348628 |
agtacaacacagatatgctaaccgatagtataaaaaataagtgcaataaaacagaattttattggcttctaatttctttcattagagctgattttacctg |
41348529 |
T |
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| Q |
193 |
tatacttattctataggtacacgaagatttcatctgtttannnnnnnnnnnnnaggcataagttagcacgtccnnnnnnnnnttacttgattttaacaac |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||| |
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| T |
41348528 |
tatacttattctataggtacacgaagatttcatctgtttatttttgtttttttaggcataaggtagcacgtcc-aaaaaaaattacttgattttaacaac |
41348430 |
T |
|
| Q |
293 |
taaaaatagatgatgaattaagaaagagttgactgttttctctttatatatgagttatctctgtgttgctgctgcagctgtcggtttgtcgaacgta |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41348429 |
taaaaatagatgatgaattaagaaagagttgactgttttctctttatatatgagttatctctgtgttgctgctgcagctgtcggtttgtcgaacgta |
41348333 |
T |
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