View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_2 (Length: 717)
Name: NF10260_low_2
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 19 - 701
Target Start/End: Original strand, 40307557 - 40308238
Alignment:
| Q |
19 |
aactaagaaacctcatacagaaaaataattatatgtgaattaatgttaatggcctgtaaatatgagattttcccttccccattcattcatcatggaagca |
118 |
Q |
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| T |
40307557 |
aactaagaaacctcatacagaaaaataattatatgtgaattaatgttaatggcctgtaaatatgagattttcccttccccattcattcatcatggaagca |
40307656 |
T |
|
| Q |
119 |
cttttccatgaataactttttataagaaattttataatataagtttgaaagaaaaactaaataaacaacactaataaattcaatttgtttatactttata |
218 |
Q |
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| T |
40307657 |
ctttaccatgaataactttttataagaaattttataatataagtttgaaagaaaaactaaataaacaacactaataaagtcaatttgtttatactttata |
40307756 |
T |
|
| Q |
219 |
ctcaatagatacttaccaaccgctcttgctcggaaaatctaccagcaaaacaactattttttattctcttaattgcaacatctgttcccctccatttgcc |
318 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40307757 |
ctcaatggatacttaccaaccgctcttgctcggaaaatctaccagcaaaacaactattttttattctcttaattgcaacatctgttcccctccatttgcc |
40307856 |
T |
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| Q |
319 |
atgatacacggttccaaaggttccagatcctaactcatgtagttcttcgatatcaccattctcaataatctatatttttacacatgaagtatttgggtta |
418 |
Q |
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| T |
40307857 |
atgatacacggttccaaaggttccagatcctaactcatgtagttcttcgatatcaccattctcaataatctatatttttacacatgaagtatttgggtta |
40307956 |
T |
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| Q |
419 |
aacatggatacttgtggattttgatttgccttctttcaatctttctactnnnnnnnnnnnnnnnnnnnnnnttggaggaaagattagatctcaggtggaa |
518 |
Q |
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| T |
40307957 |
aacatggatacttgtggattttgatttgccttctttcaatctttctactaaaaaaattaaaaagccaaaaattggaggaaagattagatctcaggtggaa |
40308056 |
T |
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| Q |
519 |
ctagtcctagcacgatttgatcaaataatgaagaccactattagtcttcgtataattaacaacaatataattataataatgcaagtgttatttccagaac |
618 |
Q |
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| T |
40308057 |
ctagtcctagcacgatttgatcaaataatgaagactgctattagtcttcgtataattaacaacaatat-attataataatgcaagtgttatttccagaac |
40308155 |
T |
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| Q |
619 |
aataactttgaagtatctctttacatgtaaacctcatattactgaaattcaatacaacagtcatcatcactctcatgtttcat |
701 |
Q |
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| T |
40308156 |
aataactttgaagtatctctttgcatgtaaacctcatattactgaaattcaatacaacagtcatcatcactctcatgtttcat |
40308238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 48271310 - 48271225
Alignment:
| Q |
260 |
ccagcaaaacaactattttttattctcttaattgcaacatctgttcccctccatttgccatgatacacggttccaaaggttccaga |
345 |
Q |
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| T |
48271310 |
ccagcaaaacatctatcagttattcgcttgattgcaacatcagttcccctccattttccatgataaacagttccaaaggtaccaga |
48271225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 16018653 - 16018572
Alignment:
| Q |
269 |
caactattttttattctcttaattgcaacatctgttcccctccatttgccatgatacacggttccaaaggttccagatccta |
350 |
Q |
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| T |
16018653 |
caactcttctttattcttttgatagcaacatctgttcctctccattttccatgatacacagtcccaaatgtaccagaaccta |
16018572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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