View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_20 (Length: 409)
Name: NF10260_low_20
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 41708697 - 41708447
Alignment:
| Q |
1 |
tcatggtgaaaagatgggtagcttaattacttgaagacatagccaacaacttaatgaatgactttaattgagaatttgatcgtggaacacttgatttc-- |
98 |
Q |
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| T |
41708697 |
tcatggtgaaaagatgggtagcttgattacttgaagacatagccaacaacttaatgaatgactttaattgagaattttatcgtggaacacttgatttgct |
41708598 |
T |
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| Q |
99 |
-----aaatcctatttattgtcacgtcatatatcttaatataatacacaattttatgaatctgctgggac--tttttctaagcataaattatgcggactc |
191 |
Q |
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| T |
41708597 |
acgtgaaatcctatttattgtcacgtcatatatcttaatatcatacacacttttatgaatctgcagggactttttttttaagcataaattatgcggagta |
41708498 |
T |
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| Q |
192 |
gagaggtttcccactgcacaatcctaatcatattaatagaaagatgaaagtat |
244 |
Q |
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| T |
41708497 |
gagaggttttcca--gcacaaccctaatcatattaatagaaagatgaaagtat |
41708447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 41708364 - 41708295
Alignment:
| Q |
328 |
aagagggaccgctatcccctaaaaactagcgagacgatcggttggaagaaccaatcttaaaccctttgct |
397 |
Q |
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| T |
41708364 |
aagagggactgctatcctctaaaaactagtgagacgatctgttggaagaaccaatcttaaatcctttgct |
41708295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 397
Target Start/End: Original strand, 9744202 - 9744271
Alignment:
| Q |
328 |
aagagggaccgctatcccctaaaaactagcgagacgatcggttggaagaaccaatcttaaaccctttgct |
397 |
Q |
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| T |
9744202 |
aagagggaccgcaatcccttaaaaactagtgaggcgatcggttggaagaaccaaccttgaaccctttgct |
9744271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 28082253 - 28082204
Alignment:
| Q |
328 |
aagagggaccgctatcccctaaaaactagcgagacgatcggttggaagaa |
377 |
Q |
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| T |
28082253 |
aagagggaccgctatcccctaaaaactagcgaggcgatcagtttgaagaa |
28082204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 397
Target Start/End: Original strand, 24538822 - 24538891
Alignment:
| Q |
328 |
aagagggaccgctatcccctaaaaactagcgagacgatcggttggaagaaccaatcttaaaccctttgct |
397 |
Q |
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| T |
24538822 |
aagatggaccactatctcttaaaaactaacgaggcgttcggttggaagaaccaaccttgaaccctttgct |
24538891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 16420756 - 16420687
Alignment:
| Q |
328 |
aagagggaccgctatcccctaaaaactagcgagacgatcggttggaagaaccaatcttaaaccctttgct |
397 |
Q |
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| T |
16420756 |
aagagggaccactatcccttaaaaactagcgaggcgctcagttggaagaaccaacctcgaaccctttgct |
16420687 |
T |
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