View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_21 (Length: 402)
Name: NF10260_low_21
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 39295948 - 39296332
Alignment:
| Q |
1 |
tcttggtttgcataaccttgaatatgttagcacttgctctttcagttttagggcattttccatatggtaaatcaagagctacacttttctccattggtaa |
100 |
Q |
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| T |
39295948 |
tcttggtttgcataaccttgaatatgttagcacttgctctttcagttttagggcattttccatatggtaaatcaagagctacacttttctccattggtaa |
39296047 |
T |
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| Q |
101 |
cattctagctttaacactatgtcgaagcgaggtggttttaagacttctttactggtttgttgtcaaaactatagggaatccttgtgtttctcttagaatc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39296048 |
catcctagctttaacactatgtcgaagcgaggtggttttaagacttctttactggtttgttgtcaaaactatagggaaaccttgtgtttctcttagaatc |
39296147 |
T |
|
| Q |
201 |
aaaacagcaataacttcattccttcaatgtattggaggaattcatagtggctgcggtgtttcttcaatagcatggctagtttattctcttgttctcacga |
300 |
Q |
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| T |
39296148 |
aaaacagcaataacttcattccttcaatgtattggaggaattcatagtggctgcggtgtttcttcaatagcatggctagtatattctctcgttctcacga |
39296247 |
T |
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| Q |
301 |
tcaaaaacaacgatgaaaacacttctccagagattctcggcgttgcattcgccattctctcgctccttacactcacttcgctctc |
385 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296248 |
tcacaaacaacgatgaaaacacttctccagagattctcggcgttgcattcgccattctctcgctccttacactcacttcgctctc |
39296332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 39289065 - 39289449
Alignment:
| Q |
1 |
tcttggtttgcataaccttgaatatgttagcacttgctctttcagttttagggcattttccatatggtaaatcaagagctacacttttctccattggtaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289065 |
tcttggtttgcataaccttgaatatgttagcacttgctctttcagctttagggcattttccatatggtaaatcaagagctacacttttctccattggtaa |
39289164 |
T |
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| Q |
101 |
cattctagctttaacactatgtcgaagcgaggtggttttaagacttctttactggtttgttgtcaaaactatagggaatccttgtgtttctcttagaatc |
200 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39289165 |
cattctagctttaacactatgtcgaagtgaggcggttttaagacttctttactggtttgttgtcaaaactatagggaagccttgtgtttctcttagaatc |
39289264 |
T |
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| Q |
201 |
aaaacagcaataacttcattccttcaatgtattggaggaattcatagtggctgcggtgtttcttcaatagcatggctagtttattctcttgttctcacga |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |
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| T |
39289265 |
aaaacagcaataacttcatttcttcaatgtattggaggaattcatagtggctgcggcgtttcttcgatagcatggctagtttattctctcgtactcacga |
39289364 |
T |
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| Q |
301 |
tcaaaaacaacgatgaaaaca---cttctccagagattctcggcgttgcattcgccattctctcgctccttacactcacttcgct |
382 |
Q |
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|||||| |||||| ||| || ||||||| ||||| ||||| |||||||||||||| ||||| ||| |||||||| ||||||| |
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| T |
39289365 |
tcaaaagcaacgacaaaaccaattcttctccggagatactcggtgttgcattcgccatcctctcactcattacactctcttcgct |
39289449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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