View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_22 (Length: 402)
Name: NF10260_low_22
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 22 - 398
Target Start/End: Original strand, 52614888 - 52615266
Alignment:
| Q |
22 |
tagcatgataaggctttttcattgatggttaa--ttccacccctcgaattcagcaggattgtgtttcatttcacccgtaagggtcgtgatctcatcggtt |
119 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52614888 |
tagcatgataaggctttttcattgatggttaaatttccaccccttgaattcagcaggattgtgtttcatttcacccgtaagggtcttgatctcatcggtt |
52614987 |
T |
|
| Q |
120 |
gtttgatgtggaactccgttggataagcttattcatcaaatgtctcttgtacgttaaaagcatatataaattaaccaggctttggggtgtaggattcgac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52614988 |
gtttgatgtggaactccgttggataagcttattcatcaaatgtctcttgtacgttaaaagcatatataaattaaccaggctttggggtgtaggattcgac |
52615087 |
T |
|
| Q |
220 |
ctgtttagattttgatgtataagtttttacattttatctaaccttaacctctcttcatcggtcacattctcccacactcactcgatatcttgtttctatc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52615088 |
ctgtttagattttgatgtataagtttttacattttatctaaccttaacctctcttcatcggtctcattctcccacactcactcgatatcttgtttctatc |
52615187 |
T |
|
| Q |
320 |
tactccattacgagatcaggtatgtctctctcgtcatgactgcatctctattttatttttcctgcttgatgtccatctc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
52615188 |
tactccattacgagatcaggtatgtctctctcgtcatgactgcatctctattttatttttcctgcttgttgtccttctc |
52615266 |
T |
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