View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_23 (Length: 399)
Name: NF10260_low_23
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_23 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 6308321 - 6307945
Alignment:
| Q |
20 |
gcttgtacccaaaatgagaaggttgattattctattcaagtcatagtatggaatcaaggcggtcaattgaatttaagggacttaaatcatattaaaagat |
119 |
Q |
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| T |
6308321 |
gcttgtacccaaaatgagaaggttgatttttctattcaagtcatagtatggaatcaaggcaatcaattgaatttaagggacttaaatcatattaaaagag |
6308222 |
T |
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| Q |
120 |
gaggt--attagagtgaaaggaaataagagtgaggtatgcataaccggtaatggtttcttgtgatttagttgataataaagtcagcctggcctctaatgg |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6308221 |
gaggtgtattagagtgaaaggaaataagagtgaggtatgcataaccggtaatggttttttgtgattta-ttgataataaagtcagcctggcctctaatgg |
6308123 |
T |
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| Q |
218 |
aaatcaaagggtaaatgtggggcaggtagttactcaactaataagaatacaacgggttatatttgatcacaaaattgttgaggttttcagagaagaggtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6308122 |
aaatcaaagggtaaatgtggggcaggtagttactcaactaataagaatacaacgggttatatttgatcacaaaattgttgaggttttcagagaagaggtt |
6308023 |
T |
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| Q |
318 |
acccaagaaattatatgataaaagtgggaaaggaatgaaatgaaacttgaatataatactcccgttttcttctctctc |
395 |
Q |
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| T |
6308022 |
acccaagaaattatatgataaaagtgggaaaggaatgaaatgaaacttgaatataatactcccgttttcttatctctc |
6307945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 107553 - 107375
Alignment:
| Q |
20 |
gcttgtacccaaaatgagaaggttgattattctattcaagtcatagtatggaatcaaggcggtcaattgaatttaagggactt-aaatcatattaaaaga |
118 |
Q |
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||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| |||||||||||| |||||||||||| || |
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| T |
107553 |
gcttgtatccaaaatgagaaggttgatttttctattcaagttatagtatggaatcaaggcaatcaattgattttaagggacttaaaatcatattaagag- |
107455 |
T |
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| Q |
119 |
tgaggtattagagtgaaaggaaataagagtgaggtatgcataaccggtaatggtttcttgtgatttagttgataataaagt |
199 |
Q |
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| T |
107454 |
tgaggtattagagtgaaaagaaataaaagtgaggtatgcacaaccgctaatggcttcttgtgattta-ttgagaataaagt |
107375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 29451366 - 29451237
Alignment:
| Q |
26 |
acccaaaatgagaaggttgattattctattcaagtcatagtatggaatcaaggcggtcaattgaatttaagggactt-aaatcatattaaaagatgaggt |
124 |
Q |
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||||||| |||||||||||||| |||||||| |||||||||||||| | ||||| ||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
29451366 |
acccaaattgagaaggttgattcttctattccagtcatagtatggagttaaggcaaccaattgattttaagggacttaaaatcatattaaaagatgaggt |
29451267 |
T |
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| Q |
125 |
attagagtgaaaggaaataagagtgaggta |
154 |
Q |
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| T |
29451266 |
attagagtgaaagggaataaaagtggggta |
29451237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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