View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_26 (Length: 370)
Name: NF10260_low_26
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 13712401 - 13712061
Alignment:
| Q |
19 |
tgttttagtttgttttttatactcgtatannnnnnnattgcgttgcgcagttggaaaggattttcaatgaagaaatcaattcatattacaaaggctttcc |
118 |
Q |
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| T |
13712401 |
tgttttagtttgttttttatactcgtatatttttttactacgttgtgcagttggaaaggattttcaatgaagaaatcaattcatattacaaaggctttcc |
13712302 |
T |
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| Q |
119 |
tgtcttcggaaacttaaccaaccttcatctaaagttgtttcaagccagacatgtgtggtacgaggtagtgaaaatgctacaaagctgtcccaaacttcaa |
218 |
Q |
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| T |
13712301 |
tgtgtttgaaaacttaaccaaccttcatctaaagttgtttcaagctagacatgtgtggtacgaggtagtgaaaatgctacaaagctgtcccaaacttcaa |
13712202 |
T |
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| Q |
219 |
actccttagaattgaaaaggtttgtttgtcccttcaattgaaaaatattggttttttatatgttattcttttcnnnnnnnnngaaagattatatgttatt |
318 |
Q |
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| T |
13712201 |
act-cttcgaattgtaaaggtttgtttgtcacttcaattgaaaaatattggttttttatatgttattcttttctttttttttgaaagattatatgttatt |
13712103 |
T |
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| Q |
319 |
ctattatgtttaagtattttgaaaaatcatgttttgtctctg |
360 |
Q |
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| T |
13712102 |
ctattatgttcaagtattttgaaaaatcatgttttgtctctg |
13712061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 19969729 - 19969674
Alignment:
| Q |
84 |
aatgaagaaatcaattcatattacaaaggctttcctgtcttcggaaacttaaccaa |
139 |
Q |
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| T |
19969729 |
aatgcagaaatcaattcatattacaaagactttccagtgtttggaaacttaaccaa |
19969674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 19806903 - 19806970
Alignment:
| Q |
180 |
gaggtagtgaaaatgctacaaagctgtcccaaacttcaaactccttagaattgaaaaggtttgtttgtc |
248 |
Q |
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| T |
19806903 |
gaggtagtgaaaatgctccaaaattgtcccaaactccaaact-cttgcaattaaaaaggtttgtttgtc |
19806970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 19806806 - 19806868
Alignment:
| Q |
83 |
caatgaagaaatcaattcatattacaaaggctttcctgtcttcggaaacttaaccaaccttca |
145 |
Q |
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| T |
19806806 |
caatgaagaaatcaatttatattacaaaggcttttccgtgtttgaaaacttaactgaccttca |
19806868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 20111955 - 20112022
Alignment:
| Q |
180 |
gaggtagtgaaaatgctacaaagctgtcccaaacttcaaactccttagaattgaaaaggtttgtttgtc |
248 |
Q |
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| T |
20111955 |
gaggtagtgaaaatgctccagaaatgtcccaaacttcaagc-acttaaaattgtaaaggtttgtttgtc |
20112022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 24890843 - 24890895
Alignment:
| Q |
85 |
atgaagaaatcaattcatattacaaaggctttcctgtcttcggaaacttaacc |
137 |
Q |
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| T |
24890843 |
atgaagaaatcaattcatattacaaaggttttcctgtgtttgaaaacttaacc |
24890895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 15784654 - 15784721
Alignment:
| Q |
180 |
gaggtagtgaaaatgctacaaagctgtcccaaacttcaaactccttagaattgaaaaggtttgtttgtc |
248 |
Q |
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| T |
15784654 |
gaggtagtgaaaatgctacagaattgtccaaaacttcaagct-cttagaattgaaaaggtctgtttgtc |
15784721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 15784561 - 15784609
Alignment:
| Q |
87 |
gaagaaatcaattcatattacaaaggctttcctgtcttcggaaacttaa |
135 |
Q |
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| T |
15784561 |
gaagaaatcaattcatataacaacggatttcctgtgtttggaaacttaa |
15784609 |
T |
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