View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_27 (Length: 356)
Name: NF10260_low_27
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 356
Target Start/End: Original strand, 13203137 - 13203500
Alignment:
| Q |
5 |
aacatctcaagttttgctcacaacgtgcttaatttagagggaaaagtatgtataatgtacaatcatataaaagattataaactaagtaactcaccatgac |
104 |
Q |
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| T |
13203137 |
aacatctcaagttttgctcacaacgtgcttaatttagagggaaaagtatgtataatgtacaatcatataaaagattataaactaagtaactcaccatggc |
13203236 |
T |
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| Q |
105 |
atcgagggatttgttactggtctctcctaattacacnnnnnnnnnnnnnngaggaaatgttaatacttaattagttctaacttgataatattgcagcaaa |
204 |
Q |
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| T |
13203237 |
atcgagggatttgttactggtctctcctagttacacaaaaacaaaaaaaagaggaaatgttaatacttaattagttctaacttgataatattgcagcaaa |
13203336 |
T |
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| Q |
205 |
aatgcaagcaaatttgagcaa-------acaactgtggttgcctatgtcattgcacacaac-------tctaaacattttctattgtgtctgaaattgca |
290 |
Q |
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| T |
13203337 |
aatgcaagcaaatttgagcaatgaggccacaattgtggttgcctatgtcattgcacacaactctaaagtctaaacattttctgt--tgtctgaaattgca |
13203434 |
T |
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| Q |
291 |
ttctacaaaccgcaatttaaaaccatggtctaagtgatagaaatgaatagtcatggcatgcatgca |
356 |
Q |
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| T |
13203435 |
gtctacaaaccgcaatttaaaaccatggtctaagtgatagaaatgaatagtcatggcatgcatgca |
13203500 |
T |
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