View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_28 (Length: 346)
Name: NF10260_low_28
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_28 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: scaffold0188 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 8342 - 8020
Alignment:
| Q |
18 |
caggaggaaccctaaaaacatcactatcaagtggcatatcaatgctcttctcaaccttcctaacaaaaatacttgtcgaacctccattacacacaaacac |
117 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
8342 |
caggtggaaccctaaaaacatcgctatcaagtggcatatcaatgctcttctcaaccttcctaacaaaaatacttgtggaacttccattacacacaaacac |
8243 |
T |
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| Q |
118 |
caaattcaaaaccaaacatagtgataataataaaaaactagacaatgataatctttgaaacggacgca-nnnnnnnnnnnnnncttctcaaaactcaaat |
216 |
Q |
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| T |
8242 |
caaattcaaaaccaaacctagtgataataataaaaaactagaaaatgataatctttgaaacggacgcattttttattttttttcttctcaaaactcaaag |
8143 |
T |
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| Q |
217 |
accctaatgagtatatatctcaacgtcacactttattgaaatcttttgcagttattatttatcctaattaatatgatttgaac----aattaattgaatt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8142 |
accctaatgagtatatatctcaacgtcacactttattgaaatcttgtgcagttattatttatcctaattaatatgatttgaacaattaattaattgaatt |
8043 |
T |
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| Q |
313 |
ggcatatagtgtggaatattcat |
335 |
Q |
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| T |
8042 |
ggcatatagtgtggaatattcat |
8020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 13636657 - 13636537
Alignment:
| Q |
31 |
aaaaacatcactatcaagtggcatatcaatgctcttctcaaccttcctaacaaaaatacttgtcgaacctccattacacacaaacaccaaattcaaaacc |
130 |
Q |
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| T |
13636657 |
aaaaacatcactatcaagtggcatatcaatggtcttctcaactttcctaacaaaagtactagttctgcctccattacacacaaacaccaaattcaaaacc |
13636558 |
T |
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| Q |
131 |
aaacatagtgataataataaa |
151 |
Q |
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| T |
13636557 |
aaacataaagctaataataaa |
13636537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 50981651 - 50981767
Alignment:
| Q |
31 |
aaaaacatcactatcaagtggcatatcaatgctcttctcaaccttcctaacaaaaatacttgtcgaacctccattacacacaaacaccaaattcaaaacc |
130 |
Q |
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|||||||||||||||||||| ||||| || || |||| ||| |||||||||||| ||| || | ||||||||||||||| |||| ||||||||||| |
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| T |
50981651 |
aaaaacatcactatcaagtgacatattaacgcctttctgaacattcctaacaaaagcactggttgtgcctccattacacacagacactaaattcaaaact |
50981750 |
T |
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| Q |
131 |
aaacatagtgataataa |
147 |
Q |
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| T |
50981751 |
aaagctagtggtaataa |
50981767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 50965531 - 50965603
Alignment:
| Q |
98 |
cctccattacacacaaacaccaaattcaaaaccaaacatagtgataataataaaaaactagacaatgataatc |
170 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||| | |||||||||| ||| |||||||||| |
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| T |
50965531 |
cctccattgcacacaaacaccaaattcaaaaccaaagctagtagtggtaataaaaaattaggaaatgataatc |
50965603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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