View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_29 (Length: 345)
Name: NF10260_low_29
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 5033601 - 5033278
Alignment:
| Q |
10 |
tctgtctaaatacaataattttacaaatcaccgtcccatgcaggaggcgtagaggttccaaatccctccctacttttaccataatatttagattcatttt |
109 |
Q |
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| T |
5033601 |
tctgtctaaatccaacaattttacaaatcaccgtcccatgcacgaggcgtagaggttccaaatccctccctacttttaccataatatttagattcatttt |
5033502 |
T |
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| Q |
110 |
ggtcgatgtgattactttgattatattcctcatacttagaggaatcaaaaattttgctttgtgatattcaaaacagaatgcggttgagcaaccatcgttg |
209 |
Q |
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| T |
5033501 |
ggtcgatgtgattactttgattat--tcctcatacttagaggaataaaaaattttgctttgtgatattcaaaacagaatgctgttgagcaaccatcgttg |
5033404 |
T |
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| Q |
210 |
gttattgtgtaatttggtggcaatgattctattcatccacagac--ccggccttggtcctcatgtaccccttgaagaatacagagtaaatatgaggaaga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||| ||||| |
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| T |
5033403 |
gttattgtgtaatttggtggcaatgattctattcatccacagacatctggccttggtcctcatgtaccccttgaagaatacagggaaaatatgaagaaga |
5033304 |
T |
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| Q |
308 |
ttattatcaatcttcaggttgaattc |
333 |
Q |
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| T |
5033303 |
ttattatccatcttaaggttgaattc |
5033278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 160 - 333
Target Start/End: Complemental strand, 5039253 - 5039078
Alignment:
| Q |
160 |
attttgctttgtgatattcaaaacagaatgcggttgagcaaccatcgttggttattgtgtaatttggtggcaatgattctattcatccaca--gacccgg |
257 |
Q |
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| T |
5039253 |
attttgctttgtgatcttcaaaacagaatgctgttgagcaaccatcattggttattgtgtactttggtggcaatgattctattcatccacatccatctgg |
5039154 |
T |
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| Q |
258 |
ccttggtcctcatgtaccccttgaagaatacagagtaaatatgaggaagattattatcaatcttcaggttgaattc |
333 |
Q |
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| T |
5039153 |
ccttggtcctcatgtaccccttgaagaatacagagaaaatatgaagaagattattatccatcttaaggttgaattc |
5039078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 5039388 - 5039261
Alignment:
| Q |
3 |
aaatttttctgtctaaatacaataattttacaaatcaccgtcccatgcaggaggcgtagaggttccaaatccctccctacttttaccataatatttagat |
102 |
Q |
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| T |
5039388 |
aaatttttctgtctaaatccaacagctttacaaactgccgcaccatgcagaagccgaagaggattcaaatccctccctaattttaccataatattcagat |
5039289 |
T |
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| Q |
103 |
tcattttggtcgatgtgattactttgat |
130 |
Q |
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| T |
5039288 |
tcattttgtacgatgtgattactttgat |
5039261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 1555143 - 1555219
Alignment:
| Q |
258 |
ccttggtcctcatgtaccccttgaagaatacagagtaaatatgaggaagattattatcaatcttcaggttgaattcc |
334 |
Q |
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| T |
1555143 |
ccttggtcctcatgtaccccttgaaaaataaattgaaaatatgaggaagattattatccatcttaaggttaaattcc |
1555219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 25085052 - 25084986
Alignment:
| Q |
182 |
acagaatgcggttgagcaaccatcgttggttattgtgtaatttggtggcaatgattctattcatcca |
248 |
Q |
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| T |
25085052 |
acagaatgccattgagcaaccatcattggtgattgtgtactttggtggtaatgattgtactcatcca |
25084986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 25109859 - 25109809
Alignment:
| Q |
259 |
cttggtcctcatgtaccccttgaagaatacagagtaaatatgaggaagatt |
309 |
Q |
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| T |
25109859 |
cttggtcctcatgttcccattgaagaatataaagaaaatatgaggaagatt |
25109809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 25095976 - 25095931
Alignment:
| Q |
194 |
tgagcaaccatcgttggttattgtgtaatttggtggcaatgattct |
239 |
Q |
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| T |
25095976 |
tgagcaaccgtcgttgataattgtgtactttggtggcaatgattct |
25095931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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