View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_30 (Length: 337)
Name: NF10260_low_30
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 31438743 - 31439062
Alignment:
| Q |
1 |
tgagttctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtggagtctgatgctgctac |
100 |
Q |
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| T |
31438743 |
tgagtcctatgttgacagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtggagtctgatgctgctac |
31438842 |
T |
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| Q |
101 |
tattgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgtttgaggatattaaggtt |
200 |
Q |
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| T |
31438843 |
tgttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgtttgaggatattaaggtt |
31438942 |
T |
|
| Q |
201 |
actgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaa |
300 |
Q |
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| T |
31438943 |
actgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaa |
31439042 |
T |
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| Q |
301 |
tttctcacttgttatgtaat |
320 |
Q |
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|||||||||||||||||||| |
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| T |
31439043 |
tttctcacttgttatgtaat |
31439062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 31196924 - 31197233
Alignment:
| Q |
8 |
tatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtggagtctgatgctgctactattgtg |
107 |
Q |
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| T |
31196924 |
tatgttggcaaaggcacttggtttgagatggtgtctcttagttgcaaaagacttgcctttaaacaaggtggtggtggagtccgatgatgctactgttgtg |
31197023 |
T |
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| Q |
108 |
gattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgtttgaggatattaaggttactgcta |
207 |
Q |
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| T |
31197024 |
gattgtatcaatggcaaggctataatggctgcaattgatccaattatccaaga---ttgctctattttaaatttgtttgaggatattattgttactgcta |
31197120 |
T |
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| Q |
208 |
ttagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaatttctca |
307 |
Q |
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|||||||||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||| |
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| T |
31197121 |
ttagtagaaatcaaaactctgatgctcgagagttagttcaaatgtccacagtagttggctctaaaaattgggtggtcactttcccacaccaaatttctca |
31197220 |
T |
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| Q |
308 |
cttgttatgtaat |
320 |
Q |
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|||| | |||||| |
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| T |
31197221 |
cttgctctgtaat |
31197233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 29250206 - 29250045
Alignment:
| Q |
1 |
tgagttctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtggagtctgatgctgctac |
100 |
Q |
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||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| | ||||| |||||||||||||||| |||| ||| | |
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| T |
29250206 |
tgagtcctatgttggcggaggcacttggtttgagatggtgtctctcagttgcaaaatatttgtgtttaaacaaggtggtggtggagttcaatgcagctgc |
29250107 |
T |
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| Q |
101 |
tattgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagatt |
162 |
Q |
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| T |
29250106 |
tgttgtggattgtatcaatgtcaaggctataatggctgcagttgatccaattatccaagatt |
29250045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 29250041 - 29249962
Alignment:
| Q |
227 |
tgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaatttctc |
306 |
Q |
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| T |
29250041 |
tgttgctcatgagttagttcaaatgtccaacatagttggctctaaaaattgggtggggaatgtcccacaccaaatttctc |
29249962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 140 - 307
Target Start/End: Original strand, 28767765 - 28767935
Alignment:
| Q |
140 |
aattgatccaattatccaagattgt---tgttctattttagatttgtttgaggatattaaggttactgctattagtagaaatcaaaactttgttgctcat |
236 |
Q |
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|||| |||||||||||||||||||| |||||||||||| ||||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||| || |
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| T |
28767765 |
aattaatccaattatccaagattgttgttgttctattttaattttgtttgaagatatgaagattactactattagtagaaatcaaaactttgttgctgat |
28767864 |
T |
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| Q |
237 |
gagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaatttctca |
307 |
Q |
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| T |
28767865 |
gagttagttcaaatgcccaaaatagttggcacaaaaaattgggtggggaaagttccacaccaaatttctca |
28767935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 28768230 - 28768310
Alignment:
| Q |
183 |
tttgaggatattaaggttactgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagtt |
263 |
Q |
| |
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||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
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| T |
28768230 |
tttgaggatatgaagattactcatattagtagaaatcaaaactttgttgctcatgggttagttcaaatgtctaaaatagtt |
28768310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 28768137 - 28768202
Alignment:
| Q |
103 |
ttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgtt |
168 |
Q |
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|||||| ||||||||||||||| ||| |||| || |||| |||||||||||||||||||||||| |
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| T |
28768137 |
ttgtggtttgtatcaatggcaaatctacgatggatgtaatttatccaattatccaagattgttgtt |
28768202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 28768423 - 28768483
Alignment:
| Q |
247 |
aaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaatttctca |
307 |
Q |
| |
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||||||||||| || |||| | |||||||||||||||| |||||| ||||||||||||| |
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| T |
28768423 |
aaatgtccaaaataattggttgaaaaaattgggtggggaaagtcccacaccaaatttctca |
28768483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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