View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_32 (Length: 335)
Name: NF10260_low_32
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 126 - 319
Target Start/End: Original strand, 7686720 - 7686905
Alignment:
| Q |
126 |
tatttaaggacgtgaaaagcaaataatggactaaaattaaagtgaatagaatttaataaaggtttaaacttgaaagatcgtaattgtatatagactaaaa |
225 |
Q |
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| T |
7686720 |
tatttaaggacgtgaaaagcaaataatggactaaaattaaagtgaatagaatttattaaaggtttaaacttgaaagatcgtaattgtatatagactaaaa |
7686819 |
T |
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| Q |
226 |
cttatttaaacnnnnnnnnnnttattataaatttataatttctagatggccagcgtctacaatgtattgtccttttttgttaactatattattg |
319 |
Q |
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| T |
7686820 |
cttatttaaacaaaaaaaaaatta--------ttataatttctagattgccagcgtctacaatgtattgtccttttttgttaactatattattg |
7686905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 7686564 - 7686686
Alignment:
| Q |
1 |
aaaaatatacaccattattgatttcaaaggatatatatgaaatctgaaataattattatggctagtttacgtgaatgaaatcaatgttccactttgcaga |
100 |
Q |
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| T |
7686564 |
aaaaatatacaccattattgatttcaaaggatatatatggaatctgaaataattattatggctagtctacgtgaatgaaatcaatgttccactttgcaga |
7686663 |
T |
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| Q |
101 |
tagtattttcctctacagaaata |
123 |
Q |
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| T |
7686664 |
tagtattttcctctacagaaata |
7686686 |
T |
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