View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_33 (Length: 332)
Name: NF10260_low_33
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 37216373 - 37216685
Alignment:
| Q |
1 |
ccaatactttactacaagattattagttaaactagaattaatttcaacttaaacatttgtttataaaagaagtctcatnnnnnnngagaataatactagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37216373 |
ccaatactttactacaagattattagttaaactagaattaatttcaacttaaacatttgtttataaaagaagtctcataaaaaaagagaataatactagc |
37216472 |
T |
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| Q |
101 |
aagttttagtaaaatattatccatagcattaagtatattaagaagagcaaacaaaaaggtagatgtgggattgatggagcatgtattatccatctatctt |
200 |
Q |
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| T |
37216473 |
aagttttagtaaaatattacccatagcattaagtatattaagaagagcaaacaaaaaggtagatgtgggattgatggagcatgtattatccatctatctt |
37216572 |
T |
|
| Q |
201 |
ctgatgaaaaacttgctacaatacaacctattttgtggtctacctgtattgaatgcatgatatggtacatggggtcccagttctatttaaaacatatatt |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37216573 |
ctgatgaaaaacttgctaaaatacaacctattttgtggtctacctgtattgaatgcatgatatggtacatggggtcccagttctatttaaaacatatatt |
37216672 |
T |
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| Q |
301 |
tgaatggtgtcta |
313 |
Q |
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||||||||||||| |
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| T |
37216673 |
tgaatggtgtcta |
37216685 |
T |
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