View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_38 (Length: 326)
Name: NF10260_low_38
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 40957887 - 40958182
Alignment:
| Q |
13 |
gaagcagagaaaaaaggaggtggtacctggcaatcaaatgagacgagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaagc |
112 |
Q |
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| T |
40957887 |
gaagcagagaaaaaaggaggtggtacctggcaatcaaatgagacgagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaagc |
40957986 |
T |
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| Q |
113 |
atacgtgtgtggtgcattttgttcccatacacaaacaacttccaaatcgtaagcagcatcccgggtttgtggtgcagaaggtttatgacatagaaacaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40957987 |
atacgtgtgtggtgcattttgttcccatacacaaacaacttccaaatcgtaagcagcatcccgggtttgtggtgcagaaggtgtatgacatagaaacaat |
40958086 |
T |
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| Q |
213 |
gaaattgtggaatctaactgataaggactacaaggacgataaacaaaaagaaattgatgagcttgttcagaaaaccattcaacgtttgggtgaact |
308 |
Q |
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| T |
40958087 |
gaaattgtggaatctaactgataaggactacaaggacgataaacaaaaagaaattgatgagcttgttctgaaaaccattcaacgtttgggtgaact |
40958182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 40944894 - 40945189
Alignment:
| Q |
13 |
gaagcagagaaaaaaggaggtggtacctggcaatcaaatgagacgagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaagc |
112 |
Q |
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| T |
40944894 |
gaagcagaaaaaaagggaggtggtagctggcaatccgttgacaccagagagctgttttatagtttccaccgagatgaggttcctgcagaatctgttatgc |
40944993 |
T |
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| Q |
113 |
atacgtgtgtggtgcattttgttcccatacacaaacaacttccaaatcgtaagcagcatcccgggtttgtggtgcagaaggtttatgacatagaaacaat |
212 |
Q |
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| T |
40944994 |
ataagtgtgtggtgcattttgtccccatacacaaacagcttccaaatcgtaaggtacatcccgggttcatagtgcagaaggtgtatgacacagatgaatt |
40945093 |
T |
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| Q |
213 |
gaaattgtggaatctaactgataaggactacaaggacgataaacaaaaagaaattgatgagcttgttcagaaaaccattcaacgtttgggtgaact |
308 |
Q |
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| T |
40945094 |
gaaactgtggaaattaactgataaggactatcaagacaataatcaacaagaaattgatgagcttgttcagaaaactcgtcaacggttgggtgaact |
40945189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 306
Target Start/End: Complemental strand, 22508269 - 22508020
Alignment:
| Q |
57 |
gagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaagcatacgtgtgtggtgcattttgttcccatacacaaacaacttcca |
156 |
Q |
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| T |
22508269 |
gagagagttattttatagtttccaccaatatgttgttccggcagaaaatgttatgcatacatgtgcggttcatttcattccggtacacaaaaaacttcca |
22508170 |
T |
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| Q |
157 |
aatcgtaagcagcatcccgggtttgtggtgcagaaggtttatgacatagaaacaatgaaattgtggaatctaactgataaggactacaaggacgataaac |
256 |
Q |
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| T |
22508169 |
acaagtaaggaggttcctgggttcattgtgcaaaaggtgtataacacaaaagaaaagaaattaaggaatttaactgataaggtctacgacgacaatcagc |
22508070 |
T |
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| Q |
257 |
aaaaagaaattgatgagcttgttcagaaaaccattcaacgtttgggtgaa |
306 |
Q |
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|| ||||||| ||| | |||||||||||||| |||||||||||||||||| |
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| T |
22508069 |
aacaagaaatggataaccttgttcagaaaactattcaacgtttgggtgaa |
22508020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 2665409 - 2665327
Alignment:
| Q |
91 |
gttcctgcagaatctgttaagcatacgtgtgtggtgcattttgttcccatacacaaacaacttccaaatcgtaagcagcatcc |
173 |
Q |
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| T |
2665409 |
gttcctgcagagtctgttatgcataagtgcgtggtgcattttgtgcccttgaacaaacagtttccgaaacgtaagcaacatcc |
2665327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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