View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10260_low_4 (Length: 670)
Name: NF10260_low_4
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 33927427 - 33927918
Alignment:
| Q |
1 |
tttatttttatttttgttatgttacaattggtttgagacnnnnnnnnnttatataaaggtttttggtatttttgggggaaattattcaattttcttccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33927427 |
tttatttttatttttgttatgttacaattggtttgagacaaaaaaaaattatataaaggtttttggtatttttgggggaaattattcaattttcttccaa |
33927526 |
T |
|
| Q |
101 |
ctggannnnnnnggttctttatgatgttaatagagtgatttggttgctaatgcaactttttgaattgcttataacttgttactatttattcttggtcttt |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33927527 |
ctggattttttttgttctttatgatgttaatagagtgatttggttgctaatgcaactttttgaattgcttataacttgttactatttattcttggtcttt |
33927626 |
T |
|
| Q |
201 |
aaatgcaaaataaataatgtgggaataataatatttgattgctaaaactaattttcttgttagtnnnnnnngaaaagtatctat-gatatgcttttgttt |
299 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
33927627 |
aaatgcaaaataaatgatgtgggaataataatatttgattgctaaaactaattttcttgttagtaaaaaaagaaaagtatctatggatatgcttttgttt |
33927726 |
T |
|
| Q |
300 |
aaattgtctgtgatgtttagaatttagtactactattttggtgactataacggtcactttttcttttgcaatgggtttgttgttttgttggttgttagca |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33927727 |
aaattgtctgtgatgtttagaatttagtactactattttgatgactataacggtcactttttcttttgcaatgggtttgttgttttgttggttgttagca |
33927826 |
T |
|
| Q |
400 |
tgaataattgccttttaaccaataattcagttggataagcacgtgaactaggttttcattttcctgaattcatctgttttggattggatatcgatctcaa |
499 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33927827 |
tg------------------aataattcagttgaataagcacgtgaactaggttttcattttcctgaattcatctgctttggattggatatcgatctcaa |
33927908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 505 - 651
Target Start/End: Original strand, 33927959 - 33928105
Alignment:
| Q |
505 |
gaaacaaaatgttgcacatacttttctaccttatacatttctcacacgtcctatttagattctaaaatctgaaatattgtttttgaagattttaagaagt |
604 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33927959 |
gaaacaaaatgttgcacgtacttttctaccttatacatttctcacacgtcctatttaaattctaaaatctgaaatattgtttttgaagattttaagaagt |
33928058 |
T |
|
| Q |
605 |
atttatgccattcgaattctataatctaaactacatagacgcgcgag |
651 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33928059 |
atttatgccattcaaattctataatctaaactacatagacgcgcgag |
33928105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 582
Target Start/End: Original strand, 7925361 - 7925402
Alignment:
| Q |
541 |
atttctcacacgtcctatttagattctaaaatctgaaatatt |
582 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7925361 |
atttctcacgtgtcctatttagattctaaaatctgaaatatt |
7925402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 582
Target Start/End: Original strand, 7685433 - 7685489
Alignment:
| Q |
526 |
ttttctaccttatacatttctcacacgtcctatttagattctaaaatctgaaatatt |
582 |
Q |
| |
|
||||||||||| || |||||| ||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
7685433 |
ttttctaccttgtaagtttctcgcacatcctatttaaattttaaaatctgaaatatt |
7685489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 582
Target Start/End: Original strand, 17223086 - 17223126
Alignment:
| Q |
542 |
tttctcacacgtcctatttagattctaaaatctgaaatatt |
582 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
17223086 |
tttctcacgcgccttatttagattctaaaatctgaaatatt |
17223126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University