View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_41 (Length: 313)
Name: NF10260_low_41
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 33386102 - 33385806
Alignment:
| Q |
1 |
gtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttcaggtcttgttacactctacagaatccatcccatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33386102 |
gtttcttttcaaaatttgtttataacctatagaattgcaataagaaggcaagtgtactaaatttcaggtcttgttacactctacagaatccatcccatta |
33386003 |
T |
|
| Q |
101 |
tttatgaactcttgccactaatatgcatcaaaagaagacaaaagttcttggaggtttgctggatcctcctataatgtatagaccatgtaattggactctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33386002 |
tttatgaactcttgccactaatatgcatcaaaagaagacaaaacttcttggaggtttgctggatcctcctataatgtatagaccatgtaattggactctt |
33385903 |
T |
|
| Q |
201 |
gccagcttcatgtttgattacgatcttcttgtacacctttaggcatgtttcttccatcaattattttggtgttttttgaatctctgcttttgatgtc |
297 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
33385902 |
gccagcttcatgtttgattatgatcttcttgtacacctttaggcatgtttcttccatcaattattttggtgttttttgaatcattgctttttatgtc |
33385806 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 25428240 - 25428289
Alignment:
| Q |
240 |
taggcatgtttcttccatcaattattttggtgttttttgaatctctgctt |
289 |
Q |
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|||||||||| || |||||||||||||||||||||| ||||||| ||||| |
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| T |
25428240 |
taggcatgttcctcccatcaattattttggtgttttctgaatctttgctt |
25428289 |
T |
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