View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_42 (Length: 312)
Name: NF10260_low_42
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 24730747 - 24730469
Alignment:
| Q |
18 |
gtaccttcaacatattgtaagttgtacatgattcttcattctctgttgattttaagttgtcagctattctctttggatccttcctacagaaatattgaag |
117 |
Q |
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| T |
24730747 |
gtaccttcaacatattgtaagttgtgcatgattcttcattctctgttgattttaagttgtcagctattctctttgggtcattcctacagaaatattgaag |
24730648 |
T |
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| Q |
118 |
taaaggactgtttcagaaaaatgtttggaactgaccatcttaaaataaaggaacaaaaactttctacttgatttcctataagaaaaatacattccatgga |
217 |
Q |
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||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24730647 |
taaaggactgtttcaaaaagatgtttggaactgaccatattaaaataaaggaacaaaaactttctacttgatttcctataagaaaaatacattccatgga |
24730548 |
T |
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| Q |
218 |
taattttcaatgcatatgaaggaag-nnnnnnnnncttaataatgctgacatcttagtaccagaactcacggactgatgt |
296 |
Q |
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| T |
24730547 |
taattttcaatgcatatgaaggaagaaaaaaaaaacttaa-aatgctggcatcttagtaccagaactcacggactgatgt |
24730469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 24722369 - 24722149
Alignment:
| Q |
18 |
gtaccttcaacatattgtaagttgtacatgattcttcattctctgttgattttaagttgtcagctattctctttggatccttcctacagaaatattgaag |
117 |
Q |
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|||||||||||||||||||||||| || |||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||| ||| || |||| |
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| T |
24722369 |
gtaccttcaacatattgtaagttgagcaagattcttcggtctctgctgattttaggttgtcagctattctctttggatttctcctacacaaaaatggaag |
24722270 |
T |
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| Q |
118 |
taaaggactgtttcagaaaaatgtttggaactgaccatcttaaaataaaggaacaaaaactttctacttgatttcc-tataagaaaaatacattccatgg |
216 |
Q |
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| T |
24722269 |
tcaagaattttttcagaaagatgtttcgaactgattatcttaaaatagaggtacagaaactttctacttaatgtccttatacg-aaaacaaattcgatgg |
24722171 |
T |
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| Q |
217 |
ataattttcaatgcatatgaag |
238 |
Q |
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| T |
24722170 |
ataattttcaatgcatatgaag |
24722149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 24691571 - 24691403
Alignment:
| Q |
18 |
gtaccttcaacatattgtaagttgtacatgattcttcattctctgttgattttaagttgtcagctattctctttggatccttcctacagaaatattgaag |
117 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||| | | |||||| || ||||||||||||| |||| || ||| ||||||| |
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| T |
24691571 |
gtaccttcaacatattataagttgtgcatgattcttcattctctgttgttccaaggttgtctgcaattctctttggattactcctgcacaaaaattgaag |
24691472 |
T |
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| Q |
118 |
t-aaaggactgtttcagaaaaatgtttggaactgaccatcttaaaataaaggaacaaaaactttctacttgat |
189 |
Q |
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| T |
24691471 |
tgaaagga----ttcagaaagaaatatagaaccgagtatataaaaataaaggaacagaaactttctacttgat |
24691403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Complemental strand, 24722128 - 24722090
Alignment:
| Q |
258 |
aatgctgacatcttagtaccagaactcacggactgatgt |
296 |
Q |
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||||||||||||||||||||||||||| | ||||||||| |
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| T |
24722128 |
aatgctgacatcttagtaccagaactcgccgactgatgt |
24722090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 24691346 - 24691306
Alignment:
| Q |
258 |
aatgctgacatcttagtaccagaactcacggactgatgtcc |
298 |
Q |
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| T |
24691346 |
aatgctggcatcttcataccagaactcacggactgatgtcc |
24691306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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