View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10260_low_43 (Length: 307)
Name: NF10260_low_43
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_43 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 24132299 - 24132581
Alignment:
| Q |
18 |
tggagaaatcttgatacacgtttcattgggtccatccaactacctctaaccaccatttcttgattaacgatccaaaatccagcgagcacaggaccaagac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24132299 |
tggagaaatcttgatacacgtttcattgggtccatccaactacctctaaccaccatttcttgattaacgatccaaaatccagcaagcacaggaccaagac |
24132398 |
T |
|
| Q |
118 |
agttatgtttaggtcattttcgttaagagatacacatgcaaattcatatttctacatactcttaaacacatggtaccattgttcacaccaattaatgtac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24132399 |
agttatgtttaggtcattttcgttaagagatacacatgcaaattcatatttctgcatactcttaaacacatggtaccattgttcacactaattaatgtac |
24132498 |
T |
|
| Q |
218 |
aattgttgtttcatatgtttgctcccttccaagtcttgacgtgatttatgggacttttctttgctgggggtgacttcatctca |
300 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24132499 |
agttgttgtttcatatgtttgctccattcccagtcttgacgtgatttatgggacttttctttgctgggggtgacttcttctca |
24132581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 120 - 293
Target Start/End: Original strand, 24136995 - 24137171
Alignment:
| Q |
120 |
ttatgtttaggtcattttcgttaagagatacacatgcaaatt---catatttctacatactcttaaacacatggtaccattgttcacaccaattaatgta |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24136995 |
ttatgttttagtcattttcgttaagagatacacatgcaaatttttcatgagtctgcatactgttaaacacatggtaccattgttcacaccaattaatgta |
24137094 |
T |
|
| Q |
217 |
caattgttgtttcatatgtttgctcccttccaagtcttgacgtgatttatgggacttttctttgctgggggtgactt |
293 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||||| |||||||||| ||||||| |||| | |||||||||| |
|
|
| T |
24137095 |
caattgttgtttcatatgtttgctccattcccactcttgatgtgatttatgtgacttttatttgataggggtgactt |
24137171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 24136716 - 24136766
Alignment:
| Q |
45 |
gggtccatccaactacctctaaccaccatttcttgattaacgatccaaaat |
95 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
24136716 |
gggtccattcaaccacctctaaccactatttcttgattaacgatctaaaat |
24136766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 24123436 - 24123474
Alignment:
| Q |
204 |
accaattaatgtacaattgttgtttcatatgtttgctcc |
242 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
24123436 |
accaattaatgtacaattattgtttcatatgtatgctcc |
24123474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University