View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_44 (Length: 306)
Name: NF10260_low_44
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 17155886 - 17156170
Alignment:
| Q |
1 |
tcaggtttgattctctgtgctgccaatttgagtgggttaatttagcttnnnnnnnnn-------ttgaaggaggttgaacagattcaaagcaaaaattaa |
93 |
Q |
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| T |
17155886 |
tcaggtttgattctctgtgctgccaatttgagtgggctaatttaacttcttcaaaataaaaaatttgaaggaggttgaatagattcaaagcaaaagttaa |
17155985 |
T |
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| Q |
94 |
gcaaactcaaaaattctaatttatagaggatttacataaacaaaattgaaatttaagctctggttttatttttaatatcttgtacataattatcttgtta |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17155986 |
gcaaactcaaaaattctaatttatagaggatttacataaacaaaattgaaatttaagctctggttttatttttaatatcttgtacataattatcttgtta |
17156085 |
T |
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| Q |
194 |
tctattctaatcaaccagtactgtaaagtat---gaatgtattcttctaaagataatatct-----tgttttagggccagaatcg |
270 |
Q |
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| T |
17156086 |
tctattctaatcaaccagtactgtaaagtatgacgactgtattcttctaaagataatatgtatgaatgttttagggccagaatcg |
17156170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18540362 - 18540409
Alignment:
| Q |
1 |
tcaggtttgattctctgtgctgccaatttgagtgggttaatttagctt |
48 |
Q |
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| T |
18540362 |
tcaggttcgattctctctggtgccaatttgagagggttaatttagctt |
18540409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4249241 - 4249288
Alignment:
| Q |
1 |
tcaggtttgattctctgtgctgccaatttgagtgggttaatttagctt |
48 |
Q |
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| T |
4249241 |
tcaggtttgattctctctggtgccaatttgagggggttagtttagctt |
4249288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 46518692 - 46518739
Alignment:
| Q |
1 |
tcaggtttgattctctgtgctgccaatttgagtgggttaatttagctt |
48 |
Q |
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|||||||||||||||| || |||||||||||| |||||| |||||||| |
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| T |
46518692 |
tcaggtttgattctctctgatgccaatttgagggggttagtttagctt |
46518739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19244173 - 19244217
Alignment:
| Q |
1 |
tcaggtttgattctctgtgctgccaatttgagtgggttaatttag |
45 |
Q |
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| T |
19244173 |
tcaggttcgattctctctggtgccaatttgagtgggctaatttag |
19244217 |
T |
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