View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_45 (Length: 296)
Name: NF10260_low_45
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_45 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 32184188 - 32184483
Alignment:
| Q |
1 |
ataggttgttcatcaagccacttggtcaatggtggtgattctgatgatgtttctttttgactttctttctcaaactcaagaggaacaaaaggaccaacag |
100 |
Q |
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| T |
32184188 |
ataggttgttcatcaagccacttggtcaatggtggtgattctgatgatgtttccttttgactttctttctcaaactcaagaggaacaaaaggaccaacag |
32184287 |
T |
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| Q |
101 |
cataaacaggaggcattcctttaacaacttctccattattaagagcttgtagtgaatgagattcaagtgcttcaaaggagttgagaaaaacaccttgtag |
200 |
Q |
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| T |
32184288 |
cataaacaggaggcattcctttaacaacttctccattattaagagcttgtagtgaatgagattcaagtgctttaaaggtgttgagaaaaacaccttgtag |
32184387 |
T |
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| Q |
201 |
ttttgttaggttaggactatcttccatcataagatttctaaatatggttggcttgaaaagaatcggtgggatagatgaatatggtaaaggtgaaaa |
296 |
Q |
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| T |
32184388 |
ttttgttaggttaggactatcttccatcataagatttctgaatatggtaggcttgaaaagaatcggtgggatagatgaatatggtaaaggtgaaaa |
32184483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 65 - 296
Target Start/End: Original strand, 32177073 - 32177307
Alignment:
| Q |
65 |
ctttctcaaactcaagaggaacaaaaggaccaacagcataaacaggaggcattcctttaacaacttctccattattaagagcttgtagtgaatgagattc |
164 |
Q |
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|||| |||||||||| |||||||||||||||||| ||||||||||||||||| ||| ||||||| |||| |||||||||| | |||||||||||| || |
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| T |
32177073 |
ctttttcaaactcaaaaggaacaaaaggaccaactgcataaacaggaggcatatttttgacaacttttccactattaagagcctctagtgaatgagactc |
32177172 |
T |
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| Q |
165 |
aagtgcttcaaaggagttgagaaaaacaccttgtagttttgttaggttaggactatcttccatcataagatttctaaatat---ggttggcttgaaaaga |
261 |
Q |
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| T |
32177173 |
aagtgcttcaaaagtgttggcaaaaacaccgtgtaagtaaacgagcttaggactatcttccatcgcaaggtttctcaatatagaagtaggttggagaaga |
32177272 |
T |
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| Q |
262 |
atcggtgggatagatgaatatggtaaaggtgaaaa |
296 |
Q |
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| T |
32177273 |
aatggtgggatagatgaatatggtaaaggtgaaaa |
32177307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 21004025 - 21003956
Alignment:
| Q |
40 |
tctgatgatgtttctttttgactttctttctcaaactcaagaggaacaaaaggaccaacagcataaacag |
109 |
Q |
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| T |
21004025 |
tctgatgatgtttccttttgattttctttctcaagttcaagaggaacaaaaggacaaacaccagaaacag |
21003956 |
T |
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