View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_46 (Length: 296)
Name: NF10260_low_46
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 36454848 - 36455117
Alignment:
| Q |
1 |
atggactggactcatagttggtgtgaccttttttgtttcttataaactaactctagtctctagtatagtatccctnnnnnnnnnnnnnnnnnnnnctcta |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36454848 |
atggactatactcatagttggtgtgaccttttttgtttcttataaactaactctagtctctagtatagtatccctaaaaaacaaaact-------ctcta |
36454940 |
T |
|
| Q |
101 |
ttgatcaaattttttcaagaagtaaaaatatagtatagtagtgtcgttaaatgacatcattaattaacttcaggttcgtcgtatctgcaaccaatttaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36454941 |
ttgatcaaattttttcaagaagtaaaaatatagtatagtagtgtcgttaaatgacatcattaattaacttcaggttcgtcgtatctgcaaccaatttaag |
36455040 |
T |
|
| Q |
201 |
cttgcgccaaaattgtatgacaaaggaaaagaatcattttggtgctctcagtttatgattcctttttgtctccatac |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36455041 |
cttgcgccaaaattgtatgacaaaggaaaagaatcattttggtgctctcagtttatgattcctttttgtctccatac |
36455117 |
T |
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