View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_47 (Length: 296)
Name: NF10260_low_47
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 54983603 - 54983342
Alignment:
| Q |
17 |
gactattggaactttaaaccatttgttatctttgaggacttggaggccttcaacctctttatcttgcagcagaatagttatagttgatggatcagaatgt |
116 |
Q |
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| T |
54983603 |
gactattggaactttaaaccatttgttatctttgaggacttggaggccttcaacctctttatcttgcagcagaatagttatagttgatggatcagaatgt |
54983504 |
T |
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| Q |
117 |
accttcaggcctagaacatgatcagccttaggacatggagggtagtaattgattctcatatacgttgcagctctctctccacattccttttggaaacagt |
216 |
Q |
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| T |
54983503 |
accttcaggcctagaacatgatcagccttaggacatggagggtagtaattgattctcatatacgttgcagctctctctccacattccttttggaaacagt |
54983404 |
T |
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| Q |
217 |
cctcttccaaattcactaatttcgacatggcccttaaaattacttcgtataactgcaataca |
278 |
Q |
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| T |
54983403 |
cctcttccaaattcactaatttcgacatggcccttaagattacttcgtataactgcaataca |
54983342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 54962782 - 54962531
Alignment:
| Q |
21 |
attggaactttaaaccatttgttatctttgaggacttggaggccttcaacctctttatcttgcagcagaatagttatagttgatggatcagaatgtacct |
120 |
Q |
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| T |
54962782 |
attggaactttaaaccactggttatcttttaggacttgaaggccttctacctctttatcttgcagcaaaaaagttatagatgatccatcagcatgtggct |
54962683 |
T |
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| Q |
121 |
tcaggcctagaacatgatcagccttaggacatggagggtagtaattgattctcatatacgttgcagctctctctccacattccttttggaaacagtcctc |
220 |
Q |
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| T |
54962682 |
ttacgcctagaacatgatcaggcataggacatggagggtagtaattgattctcataaacattgtatctctctctccacattcctttaggaagcaatcctc |
54962583 |
T |
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| Q |
221 |
ttccaaattcactaatttcgacatggcccttaaaattacttcgtataactgc |
272 |
Q |
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| T |
54962582 |
ttccaagttcagtgattttgctacggctcttaaaattatttcatataactgc |
54962531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 31321783 - 31322035
Alignment:
| Q |
20 |
tattggaactttaaaccatttgttatctttgaggacttggaggccttcaacctctttatcttgcagcagaatagttatagttgatggatcagaatgtacc |
119 |
Q |
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||||||||| |||||||| |||||||||||| |||||||||||||| |||| |||||||||||||| || |||||||| ||||| |||||||||| | |
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| T |
31321783 |
tattggaaccttaaaccaccggttatctttgagaacttggaggccttctacctttttatcttgcagcaaaaaagttatagatgatgaatcagaatgtggc |
31321882 |
T |
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| Q |
120 |
ttcaggcctagaacatgatcagccttaggacatggagggtagtaattgattctcatatacgttgcagctctctctccacattccttttggaaacagtcct |
219 |
Q |
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| T |
31321883 |
ttcagccccagagcatgatcagccataggacatggagggtagtaattggttctcatagacattgtacctctctctccacattcctttaggaaacaatcct |
31321982 |
T |
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| Q |
220 |
cttccaaattcactaatttcgacatggcccttaaaattacttcgtataactgc |
272 |
Q |
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||||||| |||| | |||| |||| |||||||||||||||| ||||||||| |
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| T |
31321983 |
cttccaagttcagtgtcttcgccatgacccttaaaattacttcatataactgc |
31322035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 31329589 - 31329841
Alignment:
| Q |
20 |
tattggaactttaaaccatttgttatctttgaggacttggaggccttcaacctctttatcttgcagcagaatagttatagttgatggatcagaatgtacc |
119 |
Q |
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|||||||||||||||||| | ||| |||||||| |||||||||||||| |||| ||||||||||||| || |||||||| ||||| |||||||||| | |
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| T |
31329589 |
tattggaactttaaaccactggttgtctttgagaacttggaggccttctaccttattatcttgcagcaaaaaagttatagatgatgaatcagaatgtggc |
31329688 |
T |
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| Q |
120 |
ttcaggcctagaacatgatcagccttaggacatggagggtagtaattgattctcatatacgttgcagctctctctccacattccttttggaaacagtcct |
219 |
Q |
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||||| || ||| ||||||||||| ||||||||||||||||||||||| |||||||| || ||| | | |||||||||||||||||| ||||||| |||| |
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| T |
31329689 |
ttcagccccagagcatgatcagccataggacatggagggtagtaattggttctcatagacattgtacccctctctccacattcctttaggaaacaatcct |
31329788 |
T |
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| Q |
220 |
cttccaaattcactaatttcgacatggcccttaaaattacttcgtataactgc |
272 |
Q |
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||||||| |||| ||| |||| ||||||||| |||||| |||| ||||||||| |
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| T |
31329789 |
cttccaagttcagtaacttcgccatggccctgaaaatttcttcatataactgc |
31329841 |
T |
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