View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_50 (Length: 290)
Name: NF10260_low_50
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 28915051 - 28914768
Alignment:
| Q |
1 |
gtctactgatataccaatttctttgcaatcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcct |
100 |
Q |
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| T |
28915051 |
gtctactgatataccaatttctttgcaatcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcct |
28914952 |
T |
|
| Q |
101 |
cacctgaacacatgcttgataaaatctaatattcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28914951 |
cacctgaacacatgcttgataaaatctaatattcattttttcgtttggtaattaaaatgtaaaggtagtagccaacacatgttttgactcttcgacattg |
28914852 |
T |
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| Q |
201 |
atgtcaacgtctatttattccattgtagaaattatagaaagctatatctccacatggttattagggcctgtcttttcatctcac |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28914851 |
atgtcaacgtctatttattccattgtagaaattatagaaagctatatctccacatggttattagggcctgtcttttcatttcac |
28914768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 278
Target Start/End: Complemental strand, 28924272 - 28924004
Alignment:
| Q |
10 |
tataccaatttctttgcaatcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaac |
109 |
Q |
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|||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
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| T |
28924272 |
tataccaatttcttcaaaatctagccttaaattaatgctgttcacttgtttcaactattcttttgcctgaaatataaatgtaacagatcctcaccttacc |
28924173 |
T |
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| Q |
110 |
acatgcttgataaaatctaatattcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacg |
209 |
Q |
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| T |
28924172 |
acatgcttgataaaatctaatattcattattttgtttgataattaaaatgtaaaggtagtagccagtgcatgttttgactctttgacattgaagtcaaag |
28924073 |
T |
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| Q |
210 |
tctatttattccattgtagaaattatagaaagctatatctccacatggttattagggcctgtcttttca |
278 |
Q |
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||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
28924072 |
tctatttcttccattgtagaaatcatagaaagctatatgtccacatggttattagggcatgtcttttca |
28924004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 28900607 - 28900342
Alignment:
| Q |
10 |
tataccaatttctttgcaatcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaac |
109 |
Q |
| |
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|||||||||||||| |||| ||| || |||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | | |
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| T |
28900607 |
tataccaatttcttcaaaatctagcctttaatttatcctagtcacttgtttcaactattcttttgcc-gaaatataaatgcaacagaccctcaccttacc |
28900509 |
T |
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| Q |
110 |
acatgcttgataaaatctaatattcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacg |
209 |
Q |
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|||||||||||||||||| | ||||||| || ||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||| ||| | || | |
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| T |
28900508 |
acatgcttgataaaatcttaaattcattactttgtttggtaattaacatgttaaggtagtagccaatacat-ttttgactcttcaacaatgaagcaaatg |
28900410 |
T |
|
| Q |
210 |
tct-atttattccattgtagaaattatagaaagctatatctccacatggttattagggcctgtctttt |
276 |
Q |
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||| |||| ||| ||||||||||| ||||||||||||||||||| |||||||||| ||| |||||||| |
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| T |
28900409 |
tctaatttcttcaattgtagaaatcatagaaagctatatctccaaatggttattaaggcttgtctttt |
28900342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 28933117 - 28932867
Alignment:
| Q |
41 |
ttaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatctaatattcattttt |
140 |
Q |
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|||||||||||| | ||||| ||||||||||||||||||| ||||||||||| ||| | ||| | |||||||| ||||| |||| || ||||| || |
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| T |
28933117 |
ttaatgctattcgcatgtttaaactattcttttgcctgaa-tataaatgcaatggattcatgccttaccacatgctggataatatctcatgttcatatta |
28933019 |
T |
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| Q |
141 |
tcgtttggtaa-ttaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaac-gt-------ctatttattccattgtagaaa |
231 |
Q |
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| | ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| |||||| || | |||| ||||||||||| || |
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| T |
28933018 |
t-gcttggtaagttaaaatgtaaaggtagtagccaatacatgttttgactcttctgcgttgaagtcaactgtcaaagcccaatttcttccattgtagtaa |
28932920 |
T |
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| Q |
232 |
ttatagaaagctatatctccacatggttattagggcctgtcttttcatctcac |
284 |
Q |
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| |||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
28932919 |
tcatagaaagctatatctatgcatggttattagagcctgtcttttcacctcac |
28932867 |
T |
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