View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_51 (Length: 289)
Name: NF10260_low_51
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 1702610 - 1702322
Alignment:
| Q |
1 |
aggtgttgaataataagaggatgatgagaaggaaagtgcttgttagtgtttgagtttgaatttaaaatagaagacgtggacgaggcataaagattcaata |
100 |
Q |
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| T |
1702610 |
aggtgttgaataataagaggatgatgagaaggaaagtgtttgctagtgtttgagtttgaatttaaaatagaagacgtggacgaggcataaagattcaata |
1702511 |
T |
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| Q |
101 |
aaattg-aaagagtgactcatgaaaggtgacgtgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttgtgtagaata |
199 |
Q |
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| T |
1702510 |
aaaatggaaagagtgactcatgaaaggtgacgtgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttgtgtagagta |
1702411 |
T |
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| Q |
200 |
gccaaagaaaacacatggcatgcttcgattggataacttattttgagagtatggtcgaagccatgggtagcacagatatccaaagactc |
288 |
Q |
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| T |
1702410 |
gccaaagaaaacacatggcatgcttcgattggataacttattttgagagtatggtcgaagccatgggtagcacagacatccaaagactc |
1702322 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 26591960 - 26592018
Alignment:
| Q |
132 |
tgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttg |
190 |
Q |
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| T |
26591960 |
tgtctggagagatataatttttgagtgggaggatggtagcattggtaggcatgatgttg |
26592018 |
T |
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