View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10260_low_52 (Length: 282)

Name: NF10260_low_52
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10260_low_52
NF10260_low_52
[»] chr2 (3 HSPs)
chr2 (1-82)||(39219820-39219901)
chr2 (143-235)||(39219667-39219759)
chr2 (234-267)||(39219399-39219432)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 39219901 - 39219820
Alignment:
Q  1 tccctaacatcatcaataggctcaaaatccatgattcaactgtgcaaactgaaaagcttcagcaagtgtaaaatcctgggaa 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39219901 tccctaacatcatcaataggctcaaaatccatgattcaactgtgcaaactgaaaagcttcagcaagtgtaaaatcctgggaa 39219820  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 39219759 - 39219667
Alignment:
Q  143 tctaggtcaaattgaatcatcaagtaatacattgattttctagaaacaaacccaaacaataaacagagcaatgtaaacacgggtaaatctttc 235  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  39219759 tctaggtcaaattgaatcctcaagtaatacatttattttctagaaacaaacccaaacaataaacatagcaatgtaaacaggggtaaatctttc 39219667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 39219432 - 39219399
Alignment:
Q  234 tctagaatttgattttgcaatttgagaagagagt 267  Q
    |||||||||||||||| |||||||||||||||||    
T  39219432 tctagaatttgatttttcaatttgagaagagagt 39219399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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