View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10260_low_53 (Length: 282)

Name: NF10260_low_53
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10260_low_53
NF10260_low_53
[»] chr6 (4 HSPs)
chr6 (40-276)||(33690608-33690844)
chr6 (75-148)||(1115015-1115088)
chr6 (79-148)||(14521790-14521859)
chr6 (80-148)||(31936695-31936763)
[»] chr5 (9 HSPs)
chr5 (80-225)||(34842721-34842865)
chr5 (45-149)||(3651585-3651687)
chr5 (40-148)||(6741930-6742038)
chr5 (106-221)||(31336221-31336337)
chr5 (40-199)||(30899945-30900103)
chr5 (106-225)||(17464187-17464306)
chr5 (79-141)||(33030858-33030920)
chr5 (79-148)||(2630348-2630417)
chr5 (106-141)||(31304613-31304648)
[»] chr1 (9 HSPs)
chr1 (83-215)||(15864685-15864816)
chr1 (40-224)||(918315-918499)
chr1 (117-214)||(2210613-2210711)
chr1 (40-192)||(32736864-32737015)
chr1 (91-213)||(3019859-3019980)
chr1 (39-138)||(35109458-35109557)
chr1 (40-149)||(37918738-37918844)
chr1 (179-214)||(48382335-48382370)
chr1 (106-139)||(3019707-3019740)
[»] chr2 (7 HSPs)
chr2 (40-157)||(27139880-27139997)
chr2 (40-199)||(28770634-28770793)
chr2 (79-223)||(39533001-39533150)
chr2 (40-148)||(2869603-2869712)
chr2 (114-215)||(44732103-44732203)
chr2 (79-171)||(15903778-15903870)
chr2 (92-157)||(13414890-13414951)
[»] chr7 (7 HSPs)
chr7 (79-225)||(45685579-45685725)
chr7 (80-221)||(23580754-23580893)
chr7 (79-148)||(5817181-5817250)
chr7 (183-225)||(31150975-31151017)
chr7 (79-224)||(4162602-4162749)
chr7 (78-148)||(23402924-23402994)
chr7 (183-225)||(31169264-31169306)
[»] chr4 (6 HSPs)
chr4 (79-156)||(18912266-18912343)
chr4 (42-197)||(34670527-34670682)
chr4 (90-141)||(39593855-39593906)
chr4 (40-130)||(42234298-42234387)
chr4 (183-224)||(9968583-9968624)
chr4 (83-148)||(18377481-18377545)
[»] chr8 (6 HSPs)
chr8 (106-224)||(14601307-14601425)
chr8 (79-148)||(9054748-9054817)
chr8 (91-149)||(34477132-34477190)
chr8 (93-190)||(6366636-6366733)
chr8 (90-128)||(33503772-33503810)
chr8 (55-139)||(37043664-37043750)
[»] chr3 (5 HSPs)
chr3 (90-225)||(37387546-37387679)
chr3 (40-128)||(41163166-41163255)
chr3 (107-196)||(44658345-44658435)
chr3 (110-221)||(34695397-34695507)
chr3 (79-144)||(25517099-25517164)
[»] scaffold0016 (2 HSPs)
scaffold0016 (40-117)||(102436-102513)
scaffold0016 (42-96)||(90350-90404)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 40 - 276
Target Start/End: Complemental strand, 33690844 - 33690608
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaa 139  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33690844 gatacaaagatgttacaagaaattatatcctaagctcaaaaagaacaagctctaatttctacacacttttcaagtcactcaaacccacgatgaatcctaa 33690745  T
Q  140 gaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcactacccaaggtatttgtgaagtgttttccaacccaaggatcactctcactc 239  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  33690744 gaaaaaacaacaaaaaaataatttttaacatttttctattgagatctcactacccaaggtatttgtgaagtgttttccaacctaaggattgctctcactc 33690645  T
Q  240 aatccttacctttttactataaaagttctctcctttg 276  Q
    || ||||||||||||||||||||||||||||||||||    
T  33690644 aacccttacctttttactataaaagttctctcctttg 33690608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 1115088 - 1115015
Alignment:
Q  75 tcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaaca 148  Q
    ||||||| ||||||||||||||||||  || |||||||||||| || || ||||||||||  ||||| ||||||    
T  1115088 tcaaaaataacaaaccctaatttctatccatttttcaagtcacccacactcacaatgaatattaagagaaaaca 1115015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 14521790 - 14521859
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaaca 148  Q
    |||||||| | ||||||||||||||| |||||| ||||| || || | |||| |||||||||| ||||||    
T  14521790 aaagaacacaacctaatttctacacatttttcatgtcacccacactctcaataaatcctaagagaaaaca 14521859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 31936695 - 31936763
Alignment:
Q  80 aagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaaca 148  Q
    ||||||||| |||||||||||| || ||||||  |||| || || | ||||||||||||||| ||||||    
T  31936695 aagaacaaatcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaaca 31936763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 34842721 - 34842865
Alignment:
Q  80 aagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttctctatt 179  Q
    ||||||| | |||||||||||| || ||||||||||||| ||||||||||||||| |||||| || |||  |||||||   ||| |||| || | ||| |    
T  34842721 aagaacatatcctaatttctactcatttttcaagtcactaaaacccacaatgaattctaagagaacacactaaagaaaac-tttgtaaccttcccctaat 34842819  T
Q  180 gagatctcactacccaaggtatttgtgaagtgttttccaacccaag 225  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||    
T  34842820 gagatctcactacccaaggtgtttgtgaaatgttttccaacccaag 34842865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 3651585 - 3651687
Alignment:
Q  45 aaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaa 144  Q
    |||| ||| ||||||||||| ||  || ||||| ||||||||||||||||||||||| || ||||||||||||||||||| | |||||||||||||| ||    
T  3651585 aaaggtgtaacaagaaattagat--tatgttcacaaagaacaaaccctaatttctacccatttttcaagtcactcaaacctataatgaatcctaagataa 3651682  T
Q  145 aacaa 149  Q
    |||||    
T  3651683 aacaa 3651687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 6741930 - 6742038
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaa 139  Q
    |||||||||| ||||||||||||||  |   ||  ||| |||||||||| |||||||||||| || |||||||||||| || || | |||||||||||||    
T  6741930 gatacaaagaagttacaagaaattagcttgcaaactcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactctcaatgaatcctaa 6742029  T
Q  140 gaaaaaaca 148  Q
    |||||||||    
T  6742030 gaaaaaaca 6742038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 31336221 - 31336337
Alignment:
Q  106 ttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgattt-ttaacatttctctattgagatctcactacccaaggtatttg 204  Q
    ||||||||||||||||||||||||| |||||||||| |||| || ||| ||| | ||| | | |||| |||| || ||||||||||| |||| || ||||    
T  31336221 ttttcaagtcactcaaacccacaataaatcctaagagaaaaaaaaaaaaaaaagctttctgatcattcctctgttaagatctcactatccaaagtgtttg 31336320  T
Q  205 tgaagtgttttccaacc 221  Q
    |||||||||| ||||||    
T  31336321 tgaagtgtttcccaacc 31336337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 30899945 - 30900103
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaa 139  Q
    |||||||||| ||||||||||||||      ||| ||| ||||||||||| ||| |||||||  | |||||||| ||||||||||||||| ||||||| |    
T  30899945 gatacaaagaggttacaagaaattagcctacaagctcacaaagaacaaactctattttctactgatttttcaagccactcaaacccacaaagaatcct-a 30900043  T
Q  140 gaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcactacccaaggt 199  Q
    || ||||||  |||||||   |||||| | || ||||| ||| |||||||||||||||||    
T  30900044 gagaaaacactaaagaaagcttttttatccttcctctaatgaaatctcactacccaaggt 30900103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 17464187 - 17464306
Alignment:
Q  106 ttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttc-tctattgagatctcactacccaaggtatttg 204  Q
    ||||||||||||||||||||| |||||||  ||||| ||||||| ||||||| | ||||| |  |||| |||| |||||||| |||||| || || ||||    
T  17464187 ttttcaagtcactcaaacccataatgaattttaagacaaaacaataaagaaa-gctttttgatctttcatctaatgagatcttactaccgaatgtgtttg 17464285  T
Q  205 tgaagtgttttccaacccaag 225  Q
    |||||||||| ||| ||||||    
T  17464286 tgaagtgtttcccagcccaag 17464306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 33030920 - 33030858
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaaga 141  Q
    |||||||||| | |||||||||| || ||||||||||||||| || | |||||||||||||||    
T  33030920 aaagaacaaaacataatttctacccatttttcaagtcactcacactctcaatgaatcctaaga 33030858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 2630348 - 2630417
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaaca 148  Q
    |||||||||| |||||||| || ||| |||||||||||| |  || ||||||||||||||||| ||||||    
T  2630348 aaagaacaaaacctaatttttatacatttttcaagtcaccctcactcacaatgaatcctaagagaaaaca 2630417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 31304613 - 31304648
Alignment:
Q  106 ttttcaagtcactcaaacccacaatgaatcctaaga 141  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31304613 ttttcaagtcactcaaacccacaataaatcctaaga 31304648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 15864685 - 15864816
Alignment:
Q  83 aacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttctctattgag 182  Q
    |||||| | |||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||| | |||||  ||||| | |||||||||| ||||    
T  15864685 aacaaatcataatgtctacccatttttcaa-tcactcaaacccacaatgaatcctaagaaaaaacaatagagaaagcattttgatcatttctctaatgag 15864783  T
Q  183 atctcactacccaaggtatttgtgaagtgtttt 215  Q
    ||||||||||||||| | ||| |||| ||||||    
T  15864784 atctcactacccaagatgtttatgaattgtttt 15864816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 918499 - 918315
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtc-actcaaacccacaatgaatccta 138  Q
    ||||||||||| |||||||||||||| |   ||  ||| |||||||||||| |||||||||| || ||||||| || |||||||||||||||||||||||    
T  918499 gatacaaagatattacaagaaattatcttacaaactcacaaagaacaaaccataatttctacccatttttcaattccactcaaacccacaatgaatccta 918400  T
Q  139 agaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcactacccaaggtatttgtgaagtgttttccaacccaa 224  Q
    ||| ||||||| || | || | |||| |   || ||||| ||||||||||||||||||| | ||||| ||| |||| | |||||||    
T  918399 agagaaaacaataatggaa-gcttttgatgcttcctctaatgagatctcactacccaagatgtttgtaaagggtttccaaacccaa 918315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 2210613 - 2210711
Alignment:
Q  117 ctcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaa-catttctctattgagatctcactacccaaggtatttgtgaagtgttt 214  Q
    |||||||||| ||||||| |||||| ||||||| |||||||  |||||| | |||||||||| |||||||||||||||||||||  ||||||| |||||    
T  2210613 ctcaaacccaaaatgaattctaagagaaaacaataaagaaaacatttttgatcatttctctaatgagatctcactacccaaggtgattgtgaactgttt 2210711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 192
Target Start/End: Complemental strand, 32737015 - 32736864
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaa 139  Q
    |||||||||| ||||||| ||||||  |   ||||||| ||||||||||||||||||||||| || |||||||||||   | || |||||||||||||||    
T  32737015 gatacaaagaggttacaaaaaattagcttaaaagttcataaagaacaaaccctaatttctacccatttttcaagtcatcgacactcacaatgaatcctaa 32736916  T
Q  140 gaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcactac 192  Q
    || |||||   |||| || || ||| | |||| ||||| ||||||||||||||    
T  32736915 gagaaaaccctaaaggaagga-tttgatcattcctctaatgagatctcactac 32736864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 3019859 - 3019980
Alignment:
Q  91 ctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcact 190  Q
    |||||||||||  | ||||||||||||||||||||| |||||||||| | | ||||||| ||||||| | ||||  | |||||  || |||||| |||||    
T  3019859 ctaatttctaccaatttttcaagtcactcaaacccaaaatgaatcctgatagaaaacaataaagaaa-gtttttcgatatttcaataatgagatatcact 3019957  T
Q  191 acccaaggtatttgtgaagtgtt 213  Q
    || |||||| |||||||||||||    
T  3019958 actcaaggtgtttgtgaagtgtt 3019980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 35109557 - 35109458
Alignment:
Q  39 agatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatccta 138  Q
    ||||||||| | ||||||||||||||  |   ||| ||| |||||||||||| |||||||||| || |||||||||||| || || ||||||||||||||    
T  35109557 agatacaaataggttacaagaaattagcttaaaagctcacaaagaacaaaccttaatttctacccaattttcaagtcacacacactcacaatgaatccta 35109458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 37918738 - 37918844
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaa 139  Q
    ||||||||||||||||||||||||| ||   ||| ||| |||||||   |||||| ||||||  | |||||||||| ||  || ||||||||||||||||    
T  37918738 gatacaaagatgttacaagaaattagatttcaagctcataaagaac---ccctaaattctacctatttttcaagtcgcttcaatccacaatgaatcctaa 37918834  T
Q  140 gaaaaaacaa 149  Q
    || |||||||    
T  37918835 gagaaaacaa 37918844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 48382370 - 48382335
Alignment:
Q  179 tgagatctcactacccaaggtatttgtgaagtgttt 214  Q
    ||||||||||||||||||||| ||||||||||||||    
T  48382370 tgagatctcactacccaaggtgtttgtgaagtgttt 48382335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 3019707 - 3019740
Alignment:
Q  106 ttttcaagtcactcaaacccacaatgaatcctaa 139  Q
    |||| |||||||||||||||||||||||||||||    
T  3019707 ttttgaagtcactcaaacccacaatgaatcctaa 3019740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 27139880 - 27139997
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaa 139  Q
    |||||||| |||||||| ||||||| ||   ||| ||| |||| |||||||||||||||||||||  ||||||||||||  |||||| ||||||||||||    
T  27139880 gatacaaaaatgttacaggaaattaaatttaaagctcacaaagtacaaaccctaatttctacacatatttcaagtcacttgaacccaaaatgaatcctaa 27139979  T
Q  140 gaaaaaacaacaaagaaa 157  Q
     | ||||||| |||||||    
T  27139980 tagaaaacaataaagaaa 27139997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 199
Target Start/End: Complemental strand, 28770793 - 28770634
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaa 139  Q
    ||||||||||| |||||||||||||  |   ||| ||| ||||||||||| ||||||||||| || |||||||||||  || || | |||||||||||||    
T  28770793 gatacaaagatattacaagaaattagcttaaaagctcacaaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaatgaatcctaa 28770694  T
Q  140 gaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcactacccaaggt 199  Q
    || ||||||  |||| ||   |||||| | ||   ||| |||||||||||||||||||||    
T  28770693 gagaaaacactaaaggaaacttttttatccttcagctaatgagatctcactacccaaggt 28770634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 39533001 - 39533150
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatga-----tttttaacatttc 173  Q
    |||||||| | ||||||||||||||| | || ||||||| |||  | ||||||||||  |||| ||||||| ||| |||  |     |||| | ||||||    
T  39533001 aaagaacatatcctaatttctacacattctttaagtcacacaagtctacaatgaatctcaagagaaaacaataaaaaaaaaaaaacattttgatcatttc 39533100  T
Q  174 tctattgagatctcactacccaaggtatttgtgaagtgttttccaaccca 223  Q
    | || |||||||||||||||||| || |||||||||||||| ||||||||    
T  39533101 tgtaatgagatctcactacccaatgtgtttgtgaagtgtttcccaaccca 39533150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 2869712 - 2869603
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaac-cctaatttctacacacttttcaagtcactcaaacccacaatgaatccta 138  Q
    |||||||||  ||||||||||||||  |   ||| ||| ||||||||||  |||||||||||| || |||||||||||| || || | ||||||||||||    
T  2869712 gatacaaaggagttacaagaaattagcttaaaagctcacaaagaacaaaaacctaatttctacccatttttcaagtcacccacactctcaatgaatccta 2869613  T
Q  139 agaaaaaaca 148  Q
    ||| ||||||    
T  2869612 agagaaaaca 2869603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 44732103 - 44732203
Alignment:
Q  114 tcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcactacccaaggtatttgtgaagtgtt 213  Q
    |||||||||||||||||||||||||||| ||||||| | ||||| | |||||| | ||  |||| ||| ||  ||||| | ||||| |||||||||||||    
T  44732103 tcactcaaacccacaatgaatcctaagagaaaacaagagagaaa-gttttttatctttcttctaatgaaattccactatctaaggtgtttgtgaagtgtt 44732201  T
Q  214 tt 215  Q
    ||    
T  44732202 tt 44732203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 15903870 - 15903778
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatt 171  Q
    ||||||||||  ||||||||||| || |||||||||||| || || | |||||||||||| || ||||||  ||||||||  |||||| ||||    
T  15903870 aaagaacaaattctaatttctacccatttttcaagtcacccacactctcaatgaatcctatgagaaaacacaaaagaaatcttttttatcatt 15903778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 13414951 - 13414890
Alignment:
Q  92 taatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaa 157  Q
    ||||||||||  | |||||||||||||||||||||||| ||||    ||||||||||| |||||||    
T  13414951 taatttctactaatttttcaagtcactcaaacccacaaggaat----agaaaaaacaagaaagaaa 13414890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 225
Target Start/End: Complemental strand, 45685725 - 45685579
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttctctat 178  Q
    |||||||||||| |||||||||  || |||| ||||||||||||  | ||||||||||||||| ||||||| |||||||   |||||| | ||||| |      
T  45685725 aaagaacaaaccttaatttctatccattttttaagtcactcaaagtcgcaatgaatcctaagagaaaacaagaaagaaagtttttttatcctttctttga 45685626  T
Q  179 tgagatctcactacccaaggtatttgtgaagtgttttccaacccaag 225  Q
    |||||||| |||| | ||||| |||||||| |||||  |||||||||    
T  45685625 tgagatctgactatcaaaggtgtttgtgaattgtttcacaacccaag 45685579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 23580893 - 23580754
Alignment:
Q  80 aagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttctctatt 179  Q
    ||||||||||| |||||||||  || |||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||  |||||| | |||||  |      
T  23580893 aagaacaaaccttaatttctatcca-ttttcaagtcactcaaacccacaatggatcataagagaaaacaataaagaaat-ttttttatcctttctaaaac 23580796  T
Q  180 gagatctcactacccaaggtatttgtgaagtgttttccaacc 221  Q
     |||| | ||||||||||||  |||| |||||||||||||||    
T  23580795 tagattttactacccaaggtgcttgtaaagtgttttccaacc 23580754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 5817250 - 5817181
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaaca 148  Q
    |||||||||| |||||||||||  || ||||||||||||||| || | ||||||||||||||||||||||    
T  5817250 aaagaacaaaacctaatttctatccatttttcaagtcactcacactctcaatgaatcctaagaaaaaaca 5817181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 31151017 - 31150975
Alignment:
Q  183 atctcactacccaaggtatttgtgaagtgttttccaacccaag 225  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  31151017 atctcactacccaaggtatttgtgaagtgtttcccaacccaag 31150975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 4162749 - 4162602
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatccta--agaaaaaacaacaaagaaatgatttttaacatttctct 176  Q
    |||||||||| | ||||||||||  | ||||||||||| ||||||||| |||||||| ||  |||||| | |  |||||||   |||| | | ||||||     
T  4162749 aaagaacaaatcataatttctacttatttttcaagtcattcaaacccataatgaatcataacagaaaacatattaaagaaagctttttcatcctttctca 4162650  T
Q  177 attgagatctcactacccaaggtatttgtgaagtgttttccaacccaa 224  Q
    | |||||| |||||||||||| |||||||||||| |||  ||||||||    
T  4162649 aatgagatatcactacccaagatatttgtgaagtatttatcaacccaa 4162602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 23402994 - 23402924
Alignment:
Q  78 aaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaaca 148  Q
    ||||||||||  |||||||||||| || ||||||  ||||||| || | ||||||||||||||| ||||||    
T  23402994 aaaagaacaagtcctaatttctacccatttttcacatcactcacactctcaatgaatcctaagagaaaaca 23402924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 31169306 - 31169264
Alignment:
Q  183 atctcactacccaaggtatttgtgaagtgttttccaacccaag 225  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||    
T  31169306 atctcactatccaaggtgtttgtgaagtgtttcccaacccaag 31169264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 18912343 - 18912266
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaa 156  Q
    |||||||||||||||| || ||  || |||||||||||||||||||||||||||||||||||| |||| || ||||||    
T  18912343 aaagaacaaaccctaaattatatccatttttcaagtcactcaaacccacaatgaatcctaagagaaaataataaagaa 18912266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 34670682 - 34670527
Alignment:
Q  42 tacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaaga 141  Q
    |||||||| ||||||||||||||  |    || ||| |||||||||| | |||||||||  || ||||||||||||||| || |||||||||||||||||    
T  34670682 tacaaagaggttacaagaaattagcttaatagctcacaaagaacaaatcataatttctatccatttttcaagtcactcacactcacaatgaatcctaaga 34670583  T
Q  142 aaaaacaacaaagaaatgatttttaacatttctctattgagatctcactacccaag 197  Q
     ||||||  |||||||   |||  | | || ||||| |||||||||||||||||||    
T  34670582 gaaaacactaaagaaaacttttagatccttcctctaatgagatctcactacccaag 34670527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 39593855 - 39593906
Alignment:
Q  90 cctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaaga 141  Q
    |||||||||||| |  || |||||||||||||||||||||||||||||||||    
T  39593855 cctaatttctacccctttgtcaagtcactcaaacccacaatgaatcctaaga 39593906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 42234387 - 42234298
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaat 130  Q
    |||| ||||| |||||||||||||| |||  ||||||| ||||||| ||| ||||||||||| || |||| |||| |||||| ||||||||    
T  42234387 gatataaagaggttacaagaaattagatctcaagttcacaaagaac-aactctaatttctactcattttttaagttactcaatcccacaat 42234298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 9968583 - 9968624
Alignment:
Q  183 atctcactacccaaggtatttgtgaagtgttttccaacccaa 224  Q
    |||||||||| |||||| |||||||||||||| |||||||||    
T  9968583 atctcactacacaaggtgtttgtgaagtgtttaccaacccaa 9968624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 18377481 - 18377545
Alignment:
Q  83 aacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaaca 148  Q
    ||||| ||||||||||||| || |||||| ||||| || ||  |||||||||||||||||||||||    
T  18377481 aacaagccctaatttctaccca-ttttcatgtcacccacacttacaatgaatcctaagaaaaaaca 18377545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 14601307 - 14601425
Alignment:
Q  106 ttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcactacccaaggtatttgt 205  Q
    |||||||||||||||||| ||| |||||||||| || ||||||| |||||||   |||  |  ||||||||| | |||||||| || |||| || ||| |    
T  14601307 ttttcaagtcactcaaacgcacgatgaatcctatgagaaaacaataaagaaagcttttagattatttctctaataagatctcattagccaatgtgtttat 14601406  T
Q  206 gaagtgttttccaacccaa 224  Q
    |||||||||||||||||||    
T  14601407 gaagtgttttccaacccaa 14601425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 9054817 - 9054748
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaaca 148  Q
    ||||||||||  ||||||||||| || ||||||||||||||| || | ||||||||||||||| ||||||    
T  9054817 aaagaacaaaatctaatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 34477190 - 34477132
Alignment:
Q  91 ctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaa 149  Q
    |||||||| || || ||||||||||||||||| ||||||||||||| |||| |||||||    
T  34477190 ctaatttcgacccatttttcaagtcactcaaatccacaatgaatccaaagagaaaacaa 34477132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 6366636 - 6366733
Alignment:
Q  93 aatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcact 190  Q
    ||||||||  |||||||||| ||||||||||  |||||||||||||||| ||||||| ||| |||   |||| | | ||| |||| ||||||||||||    
T  6366636 aatttctatccacttttcaattcactcaaactaacaatgaatcctaagagaaaacaataaaaaaaacgttttgatcctttttctaatgagatctcact 6366733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 33503810 - 33503772
Alignment:
Q  90 cctaatttctacacacttttcaagtcactcaaacccaca 128  Q
    |||||||||||| || |||||||||||||||||||||||    
T  33503810 cctaatttctacccatttttcaagtcactcaaacccaca 33503772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 37043664 - 37043750
Alignment:
Q  55 caagaaattatatcctaagttcaaaaagaacaaaccc---taatttctacacacttttcaagtcactcaaacccacaatgaatcctaa 139  Q
    |||||||||| |||  ||| ||| |||||||||||||   |||||| ||| || |||||||||||||||||||| |||||||| ||||    
T  37043664 caagaaattagatctcaagctcacaaagaacaaacccagttaattt-tacccatttttcaagtcactcaaacccgcaatgaatactaa 37043750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 37387546 - 37387679
Alignment:
Q  90 cctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcac 189  Q
    |||||||||||| || ||||||||||||| ||||| |||||||||||||| || || ||| | | ||| | ||||| | || ||| || |||||||||||    
T  37387546 cctaatttctacccatttttcaagtcacttaaaccgacaatgaatcctaaaaataaccaagaga-aaaagttttttgatatatct-taatgagatctcac 37387643  T
Q  190 tacccaaggtatttgtgaagtgttttccaacccaag 225  Q
     | | ||||| |||||||||||||| ||||||||||    
T  37387644 catcgaaggtgtttgtgaagtgtttcccaacccaag 37387679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 41163255 - 41163166
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaa-gttcaaaaagaacaaaccctaatttctacacacttttcaagtcactcaaacccaca 128  Q
    |||||||||| ||| ||| |||||| |||| || | ||| |||||||||||||||||||| || || || ||||||||||||||||||||    
T  41163255 gatacaaagaggttccaaaaaattagatccaaaagctcataaagaacaaaccctaatttcgacccagttatcaagtcactcaaacccaca 41163166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 44658435 - 44658345
Alignment:
Q  107 tttcaagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatga--tttttaacatttctctattgagatctcactacccaa 196  Q
    |||||||||||||||||||||||| ||||| |||| |||| || ||||||| ||  |||||| | |||||||| ||||||||||| ||||||    
T  44658435 tttcaagtcactcaaacccacaattaatcccaagagaaaataataaagaaa-gatttttttatcctttctctaatgagatctcaccacccaa 44658345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 34695507 - 34695397
Alignment:
Q  110 caagtcactcaaacccacaatgaatcctaagaaaaaacaacaaagaaatgatttttaacatttctctattgagatctcactacccaaggtatttgtgaag 209  Q
    ||||||||||||||| | | |||||||||||| ||||||| ||| |  |  | |||| || || | || ||||||||| ||||||||||||||  |||||    
T  34695507 caagtcactcaaaccaata-tgaatcctaagataaaacaataaaaagtttttatttatcacttttttaatgagatctcgctacccaaggtattcatgaag 34695409  T
Q  210 tgttttccaacc 221  Q
    ||||||||||||    
T  34695408 tgttttccaacc 34695397  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 25517099 - 25517164
Alignment:
Q  79 aaagaacaaaccctaatttctacacacttttcaagtcactcaaacccacaatgaatcctaagaaaa 144  Q
    |||||||||||||||||||||||  | |||||||||||| || || |||| |||| ||||| ||||    
T  25517099 aaagaacaaaccctaatttctacttatttttcaagtcacccacactcacagtgaaccctaaaaaaa 25517164  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 102513 - 102436
Alignment:
Q  40 gatacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatttctacacacttttcaagtcac 117  Q
    |||||||||| ||||||||||||||| |   ||| ||| ||| ||||||||||||||||||| || ||||||||||||    
T  102513 gatacaaagaggttacaagaaattatcttaaaagctcacaaaaaacaaaccctaatttctacccatttttcaagtcac 102436  T

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Target: scaffold0016; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 90350 - 90404
Alignment:
Q  42 tacaaagatgttacaagaaattatatcctaagttcaaaaagaacaaaccctaatt 96  Q
    |||||||| ||| |||||||||| |||| || |||||||||||||||||||||||    
T  90350 tacaaagaagtttcaagaaattagatcccaaattcaaaaagaacaaaccctaatt 90404  T

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