View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_55 (Length: 273)
Name: NF10260_low_55
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 38768184 - 38768430
Alignment:
| Q |
20 |
agatatgtgtcagaggcaaaagtgttttcactggttaccataaaaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaat |
119 |
Q |
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| T |
38768184 |
agatatgtgtcagaggcaaaagtgttttcactggttaccataagaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaat |
38768283 |
T |
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| Q |
120 |
tctcttcttctacctcaaaatatttctattattttagcaaatcttgccacgttctaatgtga-nnnnnnnnnnnaatgacaaatattagcatgttagtat |
218 |
Q |
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| T |
38768284 |
tctcttcttctacctcaaaatatttctattattttagcaaatcttgccacgttctaatgtgatttattttttttaatgacaaatattagcatgttagtat |
38768383 |
T |
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| Q |
219 |
tttctcctgtacgaggattcaaacccttgacctttaactcctttgct |
265 |
Q |
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| T |
38768384 |
tttctcccgtacgaggattcaaacccttgacctttaactcttttgct |
38768430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 44996041 - 44995964
Alignment:
| Q |
43 |
gttttcactggttaccataaaaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaatt |
120 |
Q |
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| T |
44996041 |
gttttctctggctaccacaaaaaccctgagttaacaaaggaatccatagtagatggatggtttcacacaggttgaatt |
44995964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 47774091 - 47774140
Alignment:
| Q |
209 |
atgttagtattttctcctgtacgaggattcaaacccttgacctttaactc |
258 |
Q |
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| T |
47774091 |
atgttagtattttctcccttgccaggattcaaaccctggacctttaactc |
47774140 |
T |
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