View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10260_low_59 (Length: 259)

Name: NF10260_low_59
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10260_low_59
NF10260_low_59
[»] chr5 (6 HSPs)
chr5 (39-140)||(24432968-24433070)
chr5 (206-241)||(16199051-16199086)
chr5 (200-241)||(27923885-27923926)
chr5 (157-199)||(26302551-26302593)
chr5 (199-241)||(38869618-38869660)
chr5 (200-237)||(40389794-40389831)
[»] chr3 (7 HSPs)
chr3 (199-241)||(9878944-9878986)
chr3 (200-241)||(48156942-48156983)
chr3 (200-241)||(53507142-53507183)
chr3 (198-241)||(43207499-43207542)
chr3 (199-241)||(44708281-44708323)
chr3 (200-238)||(34290902-34290940)
chr3 (200-241)||(50939493-50939534)
[»] chr6 (6 HSPs)
chr6 (198-241)||(17353757-17353800)
chr6 (205-241)||(27788947-27788983)
chr6 (198-241)||(20711977-20712020)
chr6 (200-241)||(19986966-19987007)
chr6 (199-240)||(28075587-28075628)
chr6 (198-241)||(235484-235527)
[»] scaffold0027 (1 HSPs)
scaffold0027 (196-241)||(4145-4190)
[»] chr7 (7 HSPs)
chr7 (200-241)||(47985227-47985268)
chr7 (199-241)||(19691896-19691938)
chr7 (208-241)||(24525943-24525976)
chr7 (153-199)||(22741194-22741240)
chr7 (199-241)||(38415133-38415175)
chr7 (211-241)||(48984102-48984132)
chr7 (205-238)||(25010258-25010291)
[»] chr4 (8 HSPs)
chr4 (200-241)||(24969242-24969283)
chr4 (200-241)||(37777484-37777525)
chr4 (198-241)||(2790999-2791042)
chr4 (198-241)||(16844825-16844868)
chr4 (210-241)||(32128402-32128433)
chr4 (200-241)||(38352514-38352554)
chr4 (200-241)||(54779441-54779482)
chr4 (209-241)||(54083503-54083535)
[»] chr2 (5 HSPs)
chr2 (200-241)||(26715931-26715972)
chr2 (191-241)||(24410227-24410277)
chr2 (200-241)||(9045832-9045873)
chr2 (200-241)||(10762824-10762865)
chr2 (200-241)||(27507000-27507041)
[»] chr8 (5 HSPs)
chr8 (198-241)||(42600582-42600625)
chr8 (207-238)||(23606883-23606914)
chr8 (164-199)||(40329263-40329298)
chr8 (212-241)||(10917206-10917235)
chr8 (200-241)||(45472191-45472232)
[»] chr1 (8 HSPs)
chr1 (206-241)||(1367136-1367171)
chr1 (199-238)||(9173283-9173322)
chr1 (206-241)||(44895473-44895508)
chr1 (200-241)||(13913741-13913782)
chr1 (200-241)||(23181711-23181752)
chr1 (200-241)||(40502049-40502090)
chr1 (152-199)||(3533031-3533078)
chr1 (212-241)||(27559459-27559488)
[»] scaffold0039 (1 HSPs)
scaffold0039 (200-241)||(106379-106420)


Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 24433070 - 24432968
Alignment:
Q  39 ggtccacattcttgatctctct-ttacctttgccagcttctgaaacttgttctgtccattttaattgttgattgccgataaaatagttcaaaaggacaac 137  Q
    ||||||||| |||||||||||| ||||||||  ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24433070 ggtccacatccttgatctctctcttacctttagcagcttctgaaacttgtactgtccattttaattgttgattgctgataaaatagttcaaaaggacaac 24432971  T
Q  138 cat 140  Q
    |||    
T  24432970 cat 24432968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 16199086 - 16199051
Alignment:
Q  206 cggccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  16199086 cggccctgagggggtgcaaacagctcaacagagctg 16199051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 27923885 - 27923926
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  27923885 caggcccgtccctgagggggtgcaaacagctcaacagagctg 27923926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 26302593 - 26302551
Alignment:
Q  157 gttccgggagcatagctcggttagtagaacaatgcattattat 199  Q
    |||||| ||||||||||||||| |||| |||||||||||||||    
T  26302593 gttccgtgagcatagctcggttggtaggacaatgcattattat 26302551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 38869660 - 38869618
Alignment:
Q  199 tcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||| |||||| |||||||||||||||||||||||| |||||    
T  38869660 tcaggcccggccatgagggggtgcaaacagctcaacaaagctg 38869618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 40389831 - 40389794
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacaga 237  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  40389831 caggcccggccctgagcgggtgcaaacagctcaacaga 40389794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 9878986 - 9878944
Alignment:
Q  199 tcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9878986 tcaggtccggccctgagggggtgcaaacagctcaacagagctg 9878944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 48156942 - 48156983
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  48156942 caggcccggccctgagggggtgcaaacagctcaacagagctg 48156983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 53507183 - 53507142
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  53507183 caggcccggccctgagggggtgcaaacagctcaacagagctg 53507142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 43207542 - 43207499
Alignment:
Q  198 atcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  43207542 atcaggcccggtcctgagggggtgcaaacagctcaacagagctg 43207499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 44708281 - 44708323
Alignment:
Q  199 tcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  44708281 tcaggcccggctctgagggggtgcaaacagctcaacagagctg 44708323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 34290940 - 34290902
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagag 238  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  34290940 caggcccgaccctgagggggtgcaaacagctcaacagag 34290902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 50939534 - 50939493
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  50939534 caggcccgtccctgaggaggtgcaaacagctcaacagagctg 50939493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 17353757 - 17353800
Alignment:
Q  198 atcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  17353757 atcaggcccggccctgagggggtgcaaacagctcaacagagctg 17353800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 27788983 - 27788947
Alignment:
Q  205 ccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  27788983 ccggccctgagggggtgcaaacagctcaacagagctg 27788947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 20712020 - 20711977
Alignment:
Q  198 atcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  20712020 atcaggcccggccctgaggaggtgcaaacagctcaacagagctg 20711977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 19986966 - 19987007
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||||||| ||||||||||||||||||||||||||||    
T  19986966 caggcccggccctaagggggtgcaaacagctcaacagagctg 19987007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 28075587 - 28075628
Alignment:
Q  199 tcaggtccggccctgagggggtgcaaacagctcaacagagct 240  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  28075587 tcaggcccggctctgagggggtgcaaacagctcaacagagct 28075628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 235527 - 235484
Alignment:
Q  198 atcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||    
T  235527 atcaggcccgtccctgagggggtgcaaacagcttaacagagctg 235484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 4145 - 4190
Alignment:
Q  196 ttatcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||    
T  4145 ttatcagggccggccctgagagggtgcaaacagctcaacagagctg 4190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 47985268 - 47985227
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  47985268 caggcccggccctgagggggtgcaaacagctcaacagagctg 47985227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 19691896 - 19691938
Alignment:
Q  199 tcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  19691896 tcaggcccgaccctgagggggtgcaaacagctcaacagagctg 19691938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 24525976 - 24525943
Alignment:
Q  208 gccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||||||||||||||||||||||||||||||||    
T  24525976 gccctgagggggtgcaaacagctcaacagagctg 24525943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 22741194 - 22741240
Alignment:
Q  153 aatagttccgggagcatagctcggttagtagaacaatgcattattat 199  Q
    |||||| ||| ||||||||||||||| |||| |||||||||||||||    
T  22741194 aatagtcccgtgagcatagctcggttggtaggacaatgcattattat 22741240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 38415175 - 38415133
Alignment:
Q  199 tcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||    
T  38415175 tcaggcccggctctgaggggatgcaaacagctcaacagagctg 38415133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 48984132 - 48984102
Alignment:
Q  211 ctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||||||||||||||||||||||||||||    
T  48984132 ctgagggggtgcaaacagctcaacagagctg 48984102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 25010258 - 25010291
Alignment:
Q  205 ccggccctgagggggtgcaaacagctcaacagag 238  Q
    |||||||||||||||| |||||||||||||||||    
T  25010258 ccggccctgagggggtacaaacagctcaacagag 25010291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 24969242 - 24969283
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  24969242 caggtccagccctgagggggtgcaaacagctcaacagagctg 24969283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 37777525 - 37777484
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  37777525 caggcccggccttgagggggtgcaaacagctcaacagagctg 37777484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 2791042 - 2790999
Alignment:
Q  198 atcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||| ||| | |||||||||||||||||||||||||||||||    
T  2791042 atcaggcccgactctgagggggtgcaaacagctcaacagagctg 2790999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 16844825 - 16844868
Alignment:
Q  198 atcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||| |||||  ||||||||||||||||||||||||||||||    
T  16844825 atcaggcccggctatgagggggtgcaaacagctcaacagagctg 16844868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 32128402 - 32128433
Alignment:
Q  210 cctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||||||||||||||||||||||||||||||    
T  32128402 cctgagggggtgcaaacagctcaacagagctg 32128433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 38352554 - 38352514
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  38352554 caggcccggccctgagggg-tgcaaacagctcaacagagctg 38352514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 54779441 - 54779482
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  54779441 caggcccggccctgagggagtgcaaacagctcaaccgagctg 54779482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 54083535 - 54083503
Alignment:
Q  209 ccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||||||||||||||||||||||| |||||||    
T  54083535 ccctgagggggtgcaaacagctcaatagagctg 54083503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 26715931 - 26715972
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  26715931 caggcccggccctgagggggtgcaaacagctcaacagagctg 26715972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 24410227 - 24410277
Alignment:
Q  191 cattattatcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||| ||||||| ||| |||| ||||||||||||||||||||||||||||    
T  24410227 cattactatcaggcccgtccctaagggggtgcaaacagctcaacagagctg 24410277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 9045832 - 9045873
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  9045832 caggcccggtcctgagggggtgcaaacagctcaacagagctg 9045873  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 10762865 - 10762824
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  10762865 cagggccggccctgaggggatgcaaacagctcaacagagctg 10762824  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 27507041 - 27507000
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  27507041 caggcccgtccctgagggggtgcaaacagctcaacagagctg 27507000  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 42600582 - 42600625
Alignment:
Q  198 atcaggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||||| ||| |||||||||||||||||||||||||||||||||    
T  42600582 atcaggcccgtccctgagggggtgcaaacagctcaacagagctg 42600625  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 238
Target Start/End: Complemental strand, 23606914 - 23606883
Alignment:
Q  207 ggccctgagggggtgcaaacagctcaacagag 238  Q
    ||||||||||||||||||||||||||||||||    
T  23606914 ggccctgagggggtgcaaacagctcaacagag 23606883  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 40329298 - 40329263
Alignment:
Q  164 gagcatagctcggttagtagaacaatgcattattat 199  Q
    ||||||||||||||| ||||||||||||||||||||    
T  40329298 gagcatagctcggttggtagaacaatgcattattat 40329263  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 10917206 - 10917235
Alignment:
Q  212 tgagggggtgcaaacagctcaacagagctg 241  Q
    ||||||||||||||||||||||||||||||    
T  10917206 tgagggggtgcaaacagctcaacagagctg 10917235  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 45472191 - 45472232
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||| ||||||||||||||||||||||||| ||||||    
T  45472191 cagggccggtcctgagggggtgcaaacagctcaaccgagctg 45472232  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 1367171 - 1367136
Alignment:
Q  206 cggccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  1367171 cggccctgagggggtgcaaacagctcaacagagctg 1367136  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 9173322 - 9173283
Alignment:
Q  199 tcaggtccggccctgagggggtgcaaacagctcaacagag 238  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  9173322 tcaggcccggccctgagggggtgcaaacagctcaacagag 9173283  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 241
Target Start/End: Original strand, 44895473 - 44895508
Alignment:
Q  206 cggccctgagggggtgcaaacagctcaacagagctg 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  44895473 cggccctgagggggtgcaaacagctcaacagagctg 44895508  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 13913782 - 13913741
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  13913782 caggcccgtccctgagggggtgcaaacagctcaacagagctg 13913741  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 23181711 - 23181752
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  23181711 cagggccggccctgagggggtgcaaacagctcaaccgagctg 23181752  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 40502090 - 40502049
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  40502090 caggcccgtccctgagggggtgcaaacagctcaacagagctg 40502049  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 3533078 - 3533031
Alignment:
Q  152 taatagttccgggagcatagctcggttagtagaacaatgcattattat 199  Q
    ||||||| ||| ||||||||||| |||||||| |||||||||||||||    
T  3533078 taatagtcccgtgagcatagctcagttagtaggacaatgcattattat 3533031  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 27559459 - 27559488
Alignment:
Q  212 tgagggggtgcaaacagctcaacagagctg 241  Q
    ||||||||||||||||||||||||||||||    
T  27559459 tgagggggtgcaaacagctcaacagagctg 27559488  T

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Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 106379 - 106420
Alignment:
Q  200 caggtccggccctgagggggtgcaaacagctcaacagagctg 241  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  106379 caggcccggccctgagagggtgcaaacagctcaacagagctg 106420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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