View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_6 (Length: 552)
Name: NF10260_low_6
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 23 - 535
Target Start/End: Original strand, 41301810 - 41302337
Alignment:
| Q |
23 |
aagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcatatatggttttgtctaatat |
122 |
Q |
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| T |
41301810 |
aagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcatatatggttttgtctaatat |
41301909 |
T |
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| Q |
123 |
gcataagtaagaagatcttgcatcatacacaaatgtctttttcaccattgaattaataaggcgcatcacatcatatctaattattttaatgatccaatga |
222 |
Q |
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| T |
41301910 |
gcataagtaagaagatcttacatcatatacaaatatcttttttaccattgaattaataaggcgcatcacatcatatctaattattttaatgatccaatga |
41302009 |
T |
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| Q |
223 |
taaatagtttgtgcataatgtaagaccatc-tatctcatttatgcatcatataattggcctccaaaaatatgta-------ttaagctggnnnnnnnnnn |
314 |
Q |
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| T |
41302010 |
taaatagtttgtgcataatgtaagaccttcgtatctcatttatgcatcatataattggcctccaaaaatatgtattactatttaagctgg---gtttttt |
41302106 |
T |
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| Q |
315 |
natatgaaatcttatatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttatataatcatgatgagattct |
414 |
Q |
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| T |
41302107 |
tatatgaaatcttatatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttatataatcatgatgagactct |
41302206 |
T |
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| Q |
415 |
tgaaagaaagaaagttccactataagaaaaacac----------ccgattactcccaaaatttaaaatatttcttttttgggaagtattaaatttatttt |
504 |
Q |
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| T |
41302207 |
tgaaagaaagaaagttccactataagaaaaacacaactggttttccgattactcccaaaatttaaaatatttcttttttgggaagtattaaatttatttt |
41302306 |
T |
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| Q |
505 |
cctgccctatttttctacgggttacccccta |
535 |
Q |
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| T |
41302307 |
cctgccctatttttctacgggttacccccta |
41302337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 26853080 - 26853152
Alignment:
| Q |
110 |
ttttgtctaatatgcataagtaagaagatcttgcatcatacacaaatgtctttttcaccattgaattaataag |
182 |
Q |
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| T |
26853080 |
ttttgtttaacatgcacaagtaaaatggtcttgcatcatgaaaaaatgtctttttcaccgttggattaataag |
26853152 |
T |
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