View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10260_low_64 (Length: 249)

Name: NF10260_low_64
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10260_low_64
NF10260_low_64
[»] chr4 (16 HSPs)
chr4 (1-230)||(47907196-47907427)
chr4 (81-155)||(44015437-44015511)
chr4 (80-146)||(46079364-46079430)
chr4 (82-155)||(888706-888779)
chr4 (81-114)||(50041839-50041872)
chr4 (81-114)||(50049061-50049094)
chr4 (80-147)||(29544186-29544253)
chr4 (80-155)||(29724373-29724448)
chr4 (81-152)||(36498624-36498695)
chr4 (84-115)||(52198380-52198411)
chr4 (84-114)||(5052121-5052151)
chr4 (80-114)||(31455918-31455952)
chr4 (80-114)||(33913982-33914016)
chr4 (80-114)||(52673222-52673256)
chr4 (80-114)||(53176872-53176906)
chr4 (81-114)||(30643617-30643650)
[»] chr1 (17 HSPs)
chr1 (81-154)||(46325408-46325479)
chr1 (81-154)||(46325615-46325688)
chr1 (80-146)||(48915009-48915075)
chr1 (80-146)||(48915199-48915265)
chr1 (80-146)||(48915400-48915466)
chr1 (81-152)||(49315759-49315830)
chr1 (81-147)||(19431415-19431481)
chr1 (83-148)||(27032326-27032391)
chr1 (83-148)||(27907702-27907767)
chr1 (84-155)||(7537011-7537082)
chr1 (82-147)||(11872214-11872279)
chr1 (83-148)||(48843375-48843440)
chr1 (83-154)||(51748545-51748616)
chr1 (85-147)||(19456339-19456401)
chr1 (81-110)||(3950320-3950349)
chr1 (82-114)||(17368422-17368454)
chr1 (84-151)||(39606720-39606785)
[»] chr3 (10 HSPs)
chr3 (83-148)||(39972991-39973056)
chr3 (80-147)||(10688608-10688675)
chr3 (83-148)||(4037140-4037205)
chr3 (83-148)||(11233505-11233570)
chr3 (83-148)||(49279488-49279553)
chr3 (82-155)||(52404685-52404758)
chr3 (80-114)||(30240901-30240935)
chr3 (81-114)||(39485495-39485528)
chr3 (83-148)||(39994190-39994255)
chr3 (80-116)||(47548867-47548903)
[»] chr6 (9 HSPs)
chr6 (81-149)||(9976981-9977049)
chr6 (81-155)||(6793486-6793560)
chr6 (83-148)||(9928260-9928325)
chr6 (83-148)||(22469698-22469763)
chr6 (81-114)||(28067345-28067378)
chr6 (81-155)||(24226050-24226124)
chr6 (80-114)||(28963614-28963648)
chr6 (81-114)||(512776-512809)
chr6 (81-113)||(457683-457715)
[»] chr7 (12 HSPs)
chr7 (80-155)||(30880460-30880535)
chr7 (83-153)||(18867954-18868024)
chr7 (82-152)||(42691095-42691165)
chr7 (83-148)||(16876743-16876808)
chr7 (83-148)||(23185929-23185994)
chr7 (83-148)||(46425344-46425409)
chr7 (81-148)||(19699857-19699924)
chr7 (84-146)||(2628464-2628526)
chr7 (81-155)||(27311799-27311873)
chr7 (81-154)||(37685215-37685286)
chr7 (80-120)||(15667895-15667935)
chr7 (82-110)||(48379488-48379516)
[»] chr2 (12 HSPs)
chr2 (80-147)||(11226146-11226213)
chr2 (83-148)||(3496805-3496870)
chr2 (96-155)||(14818700-14818759)
chr2 (80-114)||(8209326-8209360)
chr2 (80-146)||(23395934-23396000)
chr2 (80-146)||(41069697-41069763)
chr2 (80-114)||(6752098-6752132)
chr2 (81-139)||(32832618-32832676)
chr2 (80-114)||(39729019-39729053)
chr2 (81-146)||(1208617-1208682)
chr2 (80-147)||(31750464-31750529)
chr2 (80-112)||(33433442-33433474)
[»] chr8 (13 HSPs)
chr8 (81-150)||(12964327-12964396)
chr8 (84-148)||(33938620-33938684)
chr8 (82-155)||(226372-226443)
chr8 (82-155)||(702785-702856)
chr8 (82-155)||(739995-740066)
chr8 (82-155)||(863890-863961)
chr8 (81-114)||(44132898-44132931)
chr8 (80-155)||(41951176-41951251)
chr8 (80-150)||(28008133-28008203)
chr8 (80-150)||(28065436-28065506)
chr8 (82-112)||(42127209-42127239)
chr8 (81-114)||(20896212-20896245)
chr8 (80-113)||(35910614-35910647)
[»] chr5 (8 HSPs)
chr5 (83-148)||(37515589-37515654)
chr5 (86-152)||(3622232-3622298)
chr5 (81-148)||(17250492-17250559)
chr5 (80-114)||(9956640-9956674)
chr5 (81-139)||(37484824-37484882)
chr5 (81-114)||(19824617-19824650)
chr5 (80-112)||(2651657-2651689)
chr5 (84-112)||(8230806-8230834)
[»] scaffold0176 (1 HSPs)
scaffold0176 (84-148)||(15090-15154)
[»] scaffold0289 (1 HSPs)
scaffold0289 (80-120)||(20312-20352)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 47907427 - 47907196
Alignment:
Q  1 ggtcataggttcaaacttggacaaattagaaataatctattttaacaactaaccaataacttttgccacnnnnnnnn--ttaatgaatgattaaaataaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||    
T  47907427 ggtcataggttcaaacttggacaaattagaaataatctattttaacaactaaccaataacttttgccactaaaaaaaaattaatgaatgattaaaataaa 47907328  T
Q  99 ttattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaatggaaccctgatcttttataatggtcgtttattatccattttc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47907327 ttattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaatggaaccctgatcttttataatggtcttttattatccattttc 47907228  T
Q  199 atcggtccttcatcagtcatcattatgaatat 230  Q
    ||||||||||||||||||||||||||||||||    
T  47907227 atcggtccttcatcagtcatcattatgaatat 47907196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 44015437 - 44015511
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    |||||||||||||||||||||||| |||||||||| | ||||  ||| ||||||||||   |||| |||||||||    
T  44015437 atgaatgattaaaataaattatttagatgagagataaagattgattaagagagagataagaacaatgtcaccaaa 44015511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 46079364 - 46079430
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaa 146  Q
    ||||||||||||||||||||||||| |||||||||  |||| |  ||| |||| |||||||||||||    
T  46079364 aatgaatgattaaaataaattatttagatgagagagaatgagttgttaagagacagatagacacaaa 46079430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 888706 - 888779
Alignment:
Q  82 tgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    |||| ||||||||||||||||||||||||||| |  |||||  |||| ||||| ||| | ||||||||||||||    
T  888706 tgaaagattaaaataaattattttgatgagaggtattgattagttataagagatataaagacaaagtcaccaaa 888779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 50041839 - 50041872
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagaga 114  Q
    ||||||||||||||||||||||||||||||||||    
T  50041839 atgaatgattaaaataaattattttgatgagaga 50041872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 50049061 - 50049094
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagaga 114  Q
    ||||||||||||||||||||||||||||||||||    
T  50049061 atgaatgattaaaataaattattttgatgagaga 50049094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 29544186 - 29544253
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaag 147  Q
    ||||||||||||||||||||||||| ||||| |||  |||| |  |||  ||||||||||||||||||    
T  29544186 aatgaatgattaaaataaattatttagatgatagagaatgagttgttaatagagagatagacacaaag 29544253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 29724373 - 29724448
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    ||||||||||||||||||||||||| ||| |||||| |||| |  ||| |||| ||||||  |||||| |||||||    
T  29724373 aatgaatgattaaaataaattatttagataagagataatgagtggttaagagaaagataggaacaaagacaccaaa 29724448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 36498624 - 36498695
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcacc 152  Q
    |||| |||||||||||||||||||||||| ||||  || |||  |||  ||||||||||| |||||||||||    
T  36498624 atgagtgattaaaataaattattttgatgtgagagaattattggttagaagagagatagagacaaagtcacc 36498695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 52198411 - 52198380
Alignment:
Q  84 aatgattaaaataaattattttgatgagagat 115  Q
    ||||||||||||||||||||||||||||||||    
T  52198411 aatgattaaaataaattattttgatgagagat 52198380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 5052151 - 5052121
Alignment:
Q  84 aatgattaaaataaattattttgatgagaga 114  Q
    |||||||||||||||||||||||||||||||    
T  5052151 aatgattaaaataaattattttgatgagaga 5052121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 31455918 - 31455952
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagaga 114  Q
    ||||||||||||||||||||||||| |||||||||    
T  31455918 aatgaatgattaaaataaattatttagatgagaga 31455952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 33914016 - 33913982
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagaga 114  Q
    |||||||||||||||||||| ||||||||||||||    
T  33914016 aatgaatgattaaaataaatcattttgatgagaga 33913982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 52673222 - 52673256
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagaga 114  Q
    ||||||| |||||||||||||||||||||||||||    
T  52673222 aatgaataattaaaataaattattttgatgagaga 52673256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 53176906 - 53176872
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagaga 114  Q
    ||||||||||||||||||||||||| |||||||||    
T  53176906 aatgaatgattaaaataaattatttagatgagaga 53176872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 30643617 - 30643650
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagaga 114  Q
    |||||||||||||||||||||||| |||||||||    
T  30643617 atgaatgattaaaataaattatttagatgagaga 30643650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 46325479 - 46325408
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaa 154  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||||| |||||||||||||    
T  46325479 atgaatgattaaaataaattattttgatgagaga--atgattgattatgagagagatagagacaaagtcaccaa 46325408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 46325615 - 46325688
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaa 154  Q
    ||||||||||||||||| ||||||||||||||||  ||||||  ||||||||||| |||| |||||||||||||    
T  46325615 atgaatgattaaaataagttattttgatgagagagaatgattgattatgagagagttagagacaaagtcaccaa 46325688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 48915009 - 48915075
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaa 146  Q
    |||||||||||||||||||||||||||||||||||  |||| |  ||| ||||||||||||||||||    
T  48915009 aatgaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagatagacacaaa 48915075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 48915199 - 48915265
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaa 146  Q
    |||||||||||||||||||||||||||||||||||  |||| |  ||| ||||||||||||||||||    
T  48915199 aatgaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagatagacacaaa 48915265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 48915400 - 48915466
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaa 146  Q
    |||||||||||||||||||||||||||||||||||  |||| |  ||| ||||||||||||||||||    
T  48915400 aatgaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagatagacacaaa 48915466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 49315759 - 49315830
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcacc 152  Q
    |||| ||||||||||||||||||||||||| | || || |||  |||||||||||||||| |||||||||||    
T  49315759 atgagtgattaaaataaattattttgatgaaatataattattgattatgagagagatagagacaaagtcacc 49315830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 19431415 - 19431481
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaag 147  Q
    |||||||||||||||||||||||| |||||||||  ||||||  ||| |||||| ||||||||||||    
T  19431415 atgaatgattaaaataaattatttagatgagagagaatgattggttaagagagatatagacacaaag 19431481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 27032326 - 27032391
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  27032326 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagt 27032391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 27907767 - 27907702
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  27907767 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagt 27907702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 7537011 - 7537082
Alignment:
Q  84 aatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    ||||||||||||||||||||||||| | |||   |||||  ||| |||||||||||| ||||||||||||||    
T  7537011 aatgattaaaataaattattttgataaaagagagtgattggttaggagagagatagagacaaagtcaccaaa 7537082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 11872214 - 11872279
Alignment:
Q  82 tgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaag 147  Q
    |||||||||| ||||||||||||||||||||||  || |||  |||||||||| ||||| ||||||    
T  11872214 tgaatgattataataaattattttgatgagagagaattattggttatgagagatatagaaacaaag 11872279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 48843440 - 48843375
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| |||||||||||| |||||||    
T  48843440 gaatgattaaaataaattatttagatgagagagaatgaattgttaagagagagatagatacaaagt 48843375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 51748616 - 51748545
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaa 154  Q
    |||||||||||||||||||||| |||||||||  |||| |  |||  ||| ||||||||||||||| |||||    
T  51748616 gaatgattaaaataaattatttagatgagagagaatgagttgttaaaagaaagatagacacaaagttaccaa 51748545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 19456339 - 19456401
Alignment:
Q  85 atgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaag 147  Q
    |||||||||||||||||||| |||||||||  |||| |  ||| || ||||||||||||||||    
T  19456339 atgattaaaataaattatttagatgagagagaatgaattgttaagaaagagatagacacaaag 19456401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 110
Target Start/End: Original strand, 3950320 - 3950349
Alignment:
Q  81 atgaatgattaaaataaattattttgatga 110  Q
    ||||||||||||||||||||||||||||||    
T  3950320 atgaatgattaaaataaattattttgatga 3950349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 17368422 - 17368454
Alignment:
Q  82 tgaatgattaaaataaattattttgatgagaga 114  Q
    ||||| |||||||||||||||||||||||||||    
T  17368422 tgaataattaaaataaattattttgatgagaga 17368454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 39606720 - 39606785
Alignment:
Q  84 aatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcac 151  Q
    |||||||||||||||||||||| | |||| |||||||||  |||   |||||||||| ||||||||||    
T  39606720 aatgattaaaataaattattttaacgagaaatgatgattagtta--cgagagatagagacaaagtcac 39606785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 39973056 - 39972991
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    ||||||||||||||||||||||||||||||||  |||| |  ||| ||||||||||||||||||||    
T  39973056 gaatgattaaaataaattattttgatgagagagaatgagttgttaagagagagatagacacaaagt 39972991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 10688675 - 10688608
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaag 147  Q
    ||||||||||||||||||||||||| |||||||||  |||| |  ||| |||||||||||||||||||    
T  10688675 aatgaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaag 10688608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 4037205 - 4037140
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  4037205 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagt 4037140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 11233570 - 11233505
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  11233570 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagt 11233505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 49279553 - 49279488
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  49279553 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagt 49279488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 52404758 - 52404685
Alignment:
Q  82 tgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    ||||| ||||||||||||||||||||||| | || || |||  ||| |||||||||||| |||||| |||||||    
T  52404758 tgaataattaaaataaattattttgatgaaaaataattattgattaggagagagatagagacaaagacaccaaa 52404685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 30240935 - 30240901
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagaga 114  Q
    |||| ||||||||||||||||||||||||||||||    
T  30240935 aatggatgattaaaataaattattttgatgagaga 30240901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 39485495 - 39485528
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagaga 114  Q
    |||||||||||||||||||||||| |||||||||    
T  39485495 atgaatgattaaaataaattatttagatgagaga 39485528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 39994255 - 39994190
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  |||  ||||||||||| |||||||    
T  39994255 gaatgattaaaataaattatttagatgagagagaatgagttgttaaaagagagatagatacaaagt 39994190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 47548903 - 47548867
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatg 116  Q
    |||| |||||||||||||||||||| |||||||||||    
T  47548903 aatggatgattaaaataaattatttagatgagagatg 47548867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 9976981 - 9977049
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtc 149  Q
    |||||||||||||||||||||||||||| ||||| |||||||  |||||| | ||||||| ||||||||    
T  9976981 atgaatgattaaaataaattattttgattagagaggatgatttgttatgaaatagatagagacaaagtc 9977049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 6793560 - 6793486
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    |||| |||||||||||||||||||||||||||||| || |||  ||| || ||||||||| ||||| ||||||||    
T  6793560 atgagtgattaaaataaattattttgatgagagataattattggttaggatagagatagagacaaaatcaccaaa 6793486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 9928325 - 9928260
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  9928325 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagt 9928260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 22469763 - 22469698
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| || |||||||||||||||||    
T  22469763 gaatgattaaaataaattatttagatgagagagaatgagttgttaagaaagagatagacacaaagt 22469698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 28067378 - 28067345
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagaga 114  Q
    ||||||||||||||||||||||||||||||||||    
T  28067378 atgaatgattaaaataaattattttgatgagaga 28067345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 24226124 - 24226050
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    |||||||||||||||||||||||||||||| |||  || |||  ||| |||||| ||| | |||||| |||||||    
T  24226124 atgaatgattaaaataaattattttgatgacagagaattattggttaggagagaaataaagacaaagccaccaaa 24226050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 28963614 - 28963648
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagaga 114  Q
    |||||||||||||||||| ||||||||||||||||    
T  28963614 aatgaatgattaaaataacttattttgatgagaga 28963648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 512809 - 512776
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagaga 114  Q
    |||| |||||||||||||||||||||||||||||    
T  512809 atgagtgattaaaataaattattttgatgagaga 512776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 457715 - 457683
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagag 113  Q
    |||||||||||||||||||||||| ||||||||    
T  457715 atgaatgattaaaataaattatttagatgagag 457683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 30880460 - 30880535
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    ||||||| |||||||||||||||||||||| ||||| ||||||  |||||||||||||| | | ||||||| ||||    
T  30880460 aatgaattattaaaataaattattttgatgtgagataatgattgattatgagagagataaagataaagtcatcaaa 30880535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 18867954 - 18868024
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcacca 153  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| |||||||||||||||||||| ||||    
T  18867954 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacca 18868024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 42691095 - 42691165
Alignment:
Q  82 tgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcacc 152  Q
    |||||||||||||||||||||||||||||||||  || |||  ||| |||||||||||| |||||| ||||    
T  42691095 tgaatgattaaaataaattattttgatgagagagaattattaattaggagagagatagagacaaaggcacc 42691165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 16876743 - 16876808
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  16876743 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagt 16876808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 23185929 - 23185994
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  23185929 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagt 23185994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 46425344 - 46425409
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  46425344 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagt 46425409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 19699924 - 19699857
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    ||||||||||||||||||||||||||||||||||  || |||  |||||| | ||||||| |||||||    
T  19699924 atgaatgattaaaataaattattttgatgagagaatattattgattatgacatagatagaaacaaagt 19699857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 2628464 - 2628526
Alignment:
Q  84 aatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaa 146  Q
    ||||||||||||||| ||||| |||||||||  |||| |  ||| ||||||||||||||||||    
T  2628464 aatgattaaaataaactatttagatgagagagaatgagttgttaagagagagatagacacaaa 2628526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 27311799 - 27311873
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    ||||||||||||||||| ||||||||||| ||||  || |||  ||| ||||||||||||   ||||||||||||    
T  27311799 atgaatgattaaaataatttattttgatgtgagagaattattagttaagagagagatagagttaaagtcaccaaa 27311873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 37685215 - 37685286
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaa 154  Q
    |||||||||||||||||||||||| |||||||||  |||| |  ||| |||||||||||  |||||| ||||||    
T  37685215 atgaatgattaaaataaattatttagatgagaga--atgaatggttaagagagagataggaacaaaggcaccaa 37685286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 15667935 - 15667895
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatga 120  Q
    |||||||||||||||||||||||||  ||||||||| ||||    
T  15667935 aatgaatgattaaaataaattatttaaatgagagataatga 15667895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 48379516 - 48379488
Alignment:
Q  82 tgaatgattaaaataaattattttgatga 110  Q
    |||||||||||||||||||||||||||||    
T  48379516 tgaatgattaaaataaattattttgatga 48379488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 11226213 - 11226146
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaag 147  Q
    ||||||||||||||||||||||||| |||||||||  |||| |  ||| |||||||||||||||||||    
T  11226213 aatgaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaag 11226146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 3496805 - 3496870
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  3496805 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagt 3496870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 14818759 - 14818700
Alignment:
Q  96 aaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    |||||||||||||||||||  || |||  |||||||||||||||| ||||||||||||||    
T  14818759 aaattattttgatgagagagaattattggttatgagagagatagagacaaagtcaccaaa 14818700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 8209360 - 8209326
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagaga 114  Q
    |||||||||||||||||||||||||||||||||||    
T  8209360 aatgaatgattaaaataaattattttgatgagaga 8209326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 23396000 - 23395934
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaa 146  Q
    ||||||||||||||||||||||||| ||||| |||  |||| |  ||| ||||||||||||||||||    
T  23396000 aatgaatgattaaaataaattatttagatgatagagaatgagttgttaagagagagatagacacaaa 23395934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 41069697 - 41069763
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaa 146  Q
    ||||||||||||||||||||||||| |||||||||  |||| |  ||| |||| |||||||||||||    
T  41069697 aatgaatgattaaaataaattatttagatgagagagaatgaattgttaagagacagatagacacaaa 41069763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 6752098 - 6752132
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagaga 114  Q
    ||||||||||||||||||||||||| |||||||||    
T  6752098 aatgaatgattaaaataaattatttagatgagaga 6752132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 32832618 - 32832676
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatag 139  Q
    |||||||||||||||||||||||| |||||||||  |||| |  ||| |||||||||||    
T  32832618 atgaatgattaaaataaattatttagatgagagagaatgaatggttaagagagagatag 32832676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 39729053 - 39729019
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagaga 114  Q
    ||||||||||||||||||||||||| |||||||||    
T  39729053 aatgaatgattaaaataaattatttagatgagaga 39729019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 1208682 - 1208617
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaa 146  Q
    |||| |||||||||||||||||||| ||||||||  || |||  ||| |||||||||||| |||||    
T  1208682 atgagtgattaaaataaattattttaatgagagagaattattggttaagagagagatagagacaaa 1208617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 31750529 - 31750464
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaag 147  Q
    |||||||||||||||||||  |||| |||||||||  |||| |  ||| |||||||||||||||||||    
T  31750529 aatgaatgattaaaataaa--atttagatgagagaaaatgaattgttaagagagagatagacacaaag 31750464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 33433442 - 33433474
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgaga 112  Q
    ||||||||||||||||||||||||| |||||||    
T  33433442 aatgaatgattaaaataaattatttagatgaga 33433474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 12964396 - 12964327
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtca 150  Q
    |||||||||||||||||||||||||||||| |||  ||||||  |||  ||||| |||||||||||||||    
T  12964396 atgaatgattaaaataaattattttgatgaaagagaatgattgattaaaagagaaatagacacaaagtca 12964327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 33938620 - 33938684
Alignment:
Q  84 aatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    ||||||||||||||||||||| |||||||||  |||| |  ||| ||||||||||||||||||||    
T  33938620 aatgattaaaataaattatttagatgagagagaatgaattgttaagagagagatagacacaaagt 33938684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 226372 - 226443
Alignment:
Q  82 tgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    ||||||||||||||||||||| |||||||||||  || |||  ||| |||||||||||| |||||| |||||||    
T  226372 tgaatgattaaaataaattatgttgatgagaga--attattagttaggagagagatagagacaaaggcaccaaa 226443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 702785 - 702856
Alignment:
Q  82 tgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    ||||||||||||||||||||| |||||||||||  || |||  ||| |||||||||||| |||||| |||||||    
T  702785 tgaatgattaaaataaattatgttgatgagaga--attattagttaggagagagatagagacaaaggcaccaaa 702856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 739995 - 740066
Alignment:
Q  82 tgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    ||||||||||||||||||||| |||||||||||  || |||  ||| |||||||||||| |||||| |||||||    
T  739995 tgaatgattaaaataaattatgttgatgagaga--attattagttaggagagagatagagacaaaggcaccaaa 740066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 863890 - 863961
Alignment:
Q  82 tgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    ||||||||||||||||||||| |||||||||||  || |||  ||| |||||||||||| |||||| |||||||    
T  863890 tgaatgattaaaataaattatgttgatgagaga--attattagttaggagagagatagagacaaaggcaccaaa 863961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 44132898 - 44132931
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagaga 114  Q
    ||||||||||||||||||||||||||||||||||    
T  44132898 atgaatgattaaaataaattattttgatgagaga 44132931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 41951251 - 41951176
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcaccaaa 155  Q
    ||||||||| |||| |||||||| |||||||||||  || |||  ||| |||||||||||| ||||||||| ||||    
T  41951251 aatgaatgagtaaattaaattatcttgatgagagagaattattgattaggagagagatagagacaaagtcatcaaa 41951176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 28008203 - 28008133
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtca 150  Q
    |||| ||||||||||||| |||||||||||| |||| ||||||  |||  ||||||||| | |||||||||    
T  28008203 aatggatgattaaaataacttattttgatgaaagataatgattgattagaagagagatataaacaaagtca 28008133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 28065506 - 28065436
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtca 150  Q
    |||| ||||||||||||| |||||||||||| |||| ||||||  |||  ||||||||| | |||||||||    
T  28065506 aatggatgattaaaataacttattttgatgaaagataatgattgattagaagagagatataaacaaagtca 28065436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 42127209 - 42127239
Alignment:
Q  82 tgaatgattaaaataaattattttgatgaga 112  Q
    |||||||||||||||||||||||||||||||    
T  42127209 tgaatgattaaaataaattattttgatgaga 42127239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 20896212 - 20896245
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagaga 114  Q
    |||||||||||||||||||||||| |||||||||    
T  20896212 atgaatgattaaaataaattatttagatgagaga 20896245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 35910647 - 35910614
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagag 113  Q
    |||||||||||||||||||| |||||||||||||    
T  35910647 aatgaatgattaaaataaatcattttgatgagag 35910614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 37515589 - 37515654
Alignment:
Q  83 gaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||| ||||| |||| |||| |  ||| ||||||||||||||||||||    
T  37515589 gaatgattaaaataaattatttagatgatagataatgagttgttaagagagagatagacacaaagt 37515654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 3622232 - 3622298
Alignment:
Q  86 tgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagtcacc 152  Q
    |||||||||||||||||||||||||||||  || |||  |||  ||||||||||| |||||||||||    
T  3622232 tgattaaaataaattattttgatgagagaaaattattggttagaagagagatagagacaaagtcacc 3622298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 17250492 - 17250559
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    ||||||||||||| ||||||||||||||||||||  ||||||  |||  | ||||||||| |||||||    
T  17250492 atgaatgattaaagtaaattattttgatgagagaaaatgattgattagaatagagatagagacaaagt 17250559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 9956674 - 9956640
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagaga 114  Q
    ||||| |||||||||||||||||||||||||||||    
T  9956674 aatgagtgattaaaataaattattttgatgagaga 9956640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 37484882 - 37484824
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagagatgatgattccttatgagagagatag 139  Q
    |||||||||||||||||||||||||||||| |||  || |||  |||||| ||||||||    
T  37484882 atgaatgattaaaataaattattttgatgaaagaaaattattagttatgaaagagatag 37484824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 19824650 - 19824617
Alignment:
Q  81 atgaatgattaaaataaattattttgatgagaga 114  Q
    |||||||||||||||||||||||| |||||||||    
T  19824650 atgaatgattaaaataaattatttagatgagaga 19824617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 2651689 - 2651657
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgaga 112  Q
    ||||||||||||||||||||||||| |||||||    
T  2651689 aatgaatgattaaaataaattatttagatgaga 2651657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 8230806 - 8230834
Alignment:
Q  84 aatgattaaaataaattattttgatgaga 112  Q
    |||||||||||||||||||||||||||||    
T  8230806 aatgattaaaataaattattttgatgaga 8230834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 15154 - 15090
Alignment:
Q  84 aatgattaaaataaattattttgatgagagatgatgattccttatgagagagatagacacaaagt 148  Q
    |||||||||||||||||||||||||||||||  |||| |  ||| || |||||||||||||||||    
T  15154 aatgattaaaataaattattttgatgagagagaatgagttgttaagatagagatagacacaaagt 15090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 20352 - 20312
Alignment:
Q  80 aatgaatgattaaaataaattattttgatgagagatgatga 120  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  20352 aatgaatgattaaaataaattatttagatgagagataatga 20312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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