View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_65 (Length: 249)
Name: NF10260_low_65
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 50039201 - 50038948
Alignment:
| Q |
1 |
cttagtaatcaatagttttaaagtttataaatgcnnnnnnnngttacattataaatgcttcttttaaaacaaattttt---------------taacaag |
85 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
50039201 |
cttagtaatcaatagttttaaagtttataaatgcttttttttgttacattataaatgcttcttttaaaacaaaattttcaatttttaaatttttaacaag |
50039102 |
T |
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| Q |
86 |
tactacta-----ttatataaacaattgctaacagcatctttaatggaattgttctaattaatggagacttttatttagaatgaaaagcnnnnnnnnnng |
180 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
50039101 |
tactactactccattatataaacaattgctaacagcatctttaatggaattg---taattaatggagacttttatttagaatgaaaagcaaaaaaaaaag |
50039005 |
T |
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| Q |
181 |
gagtatc-nnnnnnnnnaaaaggaaaaaaggagtgtctatatcaaacaccaaactct |
236 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50039004 |
gagtatcttttttttttaaaaggaaaaaaggagtgtctatatcaaacaccaaactct |
50038948 |
T |
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