View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10260_low_67 (Length: 246)

Name: NF10260_low_67
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10260_low_67
NF10260_low_67
[»] chr1 (5 HSPs)
chr1 (18-239)||(1854120-1854342)
chr1 (55-97)||(40618904-40618946)
chr1 (46-97)||(19396207-19396258)
chr1 (46-93)||(48131244-48131291)
chr1 (55-93)||(3431328-3431366)
[»] chr4 (8 HSPs)
chr4 (55-93)||(18458750-18458788)
chr4 (55-93)||(55430594-55430632)
chr4 (55-99)||(48288010-48288054)
chr4 (46-93)||(20096286-20096333)
chr4 (55-93)||(44195329-44195367)
chr4 (55-93)||(45970732-45970770)
chr4 (55-91)||(34968342-34968378)
chr4 (69-97)||(56556109-56556137)
[»] chr8 (3 HSPs)
chr8 (46-93)||(3650518-3650565)
chr8 (56-93)||(69377-69414)
chr8 (46-98)||(12959282-12959334)
[»] chr7 (4 HSPs)
chr7 (63-98)||(22564175-22564210)
chr7 (55-93)||(22267579-22267617)
chr7 (55-93)||(24614693-24614731)
chr7 (55-91)||(31037668-31037704)
[»] chr5 (3 HSPs)
chr5 (46-97)||(7713526-7713577)
chr5 (46-98)||(28391647-28391699)
chr5 (62-90)||(32635904-32635932)
[»] chr6 (2 HSPs)
chr6 (46-92)||(30639442-30639488)
chr6 (46-98)||(331902-331954)
[»] chr2 (5 HSPs)
chr2 (55-93)||(34364520-34364558)
chr2 (55-93)||(41555292-41555330)
chr2 (46-91)||(41682403-41682448)
chr2 (57-93)||(17413359-17413395)
chr2 (57-93)||(17779019-17779055)
[»] chr3 (3 HSPs)
chr3 (55-92)||(35126294-35126331)
chr3 (46-94)||(29791773-29791821)
chr3 (46-98)||(33223861-33223913)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 1854342 - 1854120
Alignment:
Q  18 tgaatatcagatcttgcatacattatggccttccatctattatgcattatttctaccaactgagttaaactcacgaagactctcaaannnnnnnctaatc 117  Q
    |||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||        ||||||    
T  1854342 tgaatatcagatcttgcatatattatgaccttgcatctattatgcattattcctaccaactgagttaaactcacgaagactctcaattttttttctaatc 1854243  T
Q  118 gaaatccaacaattctcaatgttataaaaaacacttccttcaaataaaatatttatacacctataaatgcggtctaataacttgaagagaattaagtt-c 216  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1854242 gaaatctaacaattctcaatgttataaaaaacacttccttcaaataaaatatttatacacctataaatgcggtctaataacttgaagagaattaagttcc 1854143  T
Q  217 cctgttttttctctttcttctct 239  Q
    |||||||||||||||||||||||    
T  1854142 cctgttttttctctttcttctct 1854120  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 40618946 - 40618904
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacgaagac 97  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  40618946 tattatgcattatctttaccaactgagttaaactcacgaagac 40618904  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 19396207 - 19396258
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacgaagac 97  Q
    |||| ||| |||||||||||||  ||||||||||||||||||||||| ||||    
T  19396207 ccttgcatatattatgcattatccctaccaactgagttaaactcacggagac 19396258  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 48131244 - 48131291
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacga 93  Q
    |||| ||| ||||||||||||| ||| |||||||||||||||||||||    
T  48131244 ccttacatatattatgcattatctctgccaactgagttaaactcacga 48131291  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 3431366 - 3431328
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacga 93  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  3431366 tattatgcattcttcctaccaactgagttaaactcacga 3431328  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 18458788 - 18458750
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacga 93  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  18458788 tattatgcattgtttctaccaactgagttaaactcacga 18458750  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 55430632 - 55430594
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacga 93  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  55430632 tattatgcattattcctaccaactgagttaaactcacga 55430594  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 48288010 - 48288054
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacgaagactc 99  Q
    ||||||| ||||||||||||||||||||||| | |||||||||||    
T  48288010 tattatgtattatttctaccaactgagttaagcccacgaagactc 48288054  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 20096286 - 20096333
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacga 93  Q
    |||| ||| |||||||||||||  ||||||||||||||||||||||||    
T  20096286 ccttgcatatattatgcattatccctaccaactgagttaaactcacga 20096333  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 44195329 - 44195367
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacga 93  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  44195329 tattatgtattattcctaccaactgagttaaactcacga 44195367  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 45970732 - 45970770
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacga 93  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  45970732 tattatgcattgtttctaccaactgagttaagctcacga 45970770  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 34968378 - 34968342
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcac 91  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  34968378 tattatgcattatttttaccaactgagttaagctcac 34968342  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 56556137 - 56556109
Alignment:
Q  69 tctaccaactgagttaaactcacgaagac 97  Q
    |||||||||||||||||||||||||||||    
T  56556137 tctaccaactgagttaaactcacgaagac 56556109  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 3650565 - 3650518
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacga 93  Q
    |||| ||| ||||||||||| ||||||||||||||||||| |||||||    
T  3650565 ccttacatatattatgcattttttctaccaactgagttaagctcacga 3650518  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 69414 - 69377
Alignment:
Q  56 attatgcattatttctaccaactgagttaaactcacga 93  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  69414 attatgcattattcctaccaactgagttaaattcacga 69377  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 12959334 - 12959282
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacgaagact 98  Q
    |||| ||| ||||||||||| |||||||||| | ||||||| |||||||||||    
T  12959334 ccttacatatattatgcattgtttctaccaattaagttaaagtcacgaagact 12959282  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 22564175 - 22564210
Alignment:
Q  63 attatttctaccaactgagttaaactcacgaagact 98  Q
    |||||| |||||||||||||||||||||||||||||    
T  22564175 attattcctaccaactgagttaaactcacgaagact 22564210  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 22267617 - 22267579
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacga 93  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  22267617 tattatgcattgtctctaccaactgagttaaactcacga 22267579  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 24614731 - 24614693
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacga 93  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  24614731 tattatgcattattcctatcaactgagttaaactcacga 24614693  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 31037668 - 31037704
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcac 91  Q
    ||||||||||| || ||||||||||||||||||||||    
T  31037668 tattatgcattgttcctaccaactgagttaaactcac 31037704  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 7713577 - 7713526
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacgaagac 97  Q
    |||| ||| ||||||||||||||  || ||||||||||||||||||||||||    
T  7713577 ccttgcatatattatgcattattcatatcaactgagttaaactcacgaagac 7713526  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 28391647 - 28391699
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacgaagact 98  Q
    ||||| || |||||| ||||||||||| |||||||| ||||||||||| ||||    
T  28391647 ccttctatatattatacattatttctatcaactgagctaaactcacgaggact 28391699  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 32635932 - 32635904
Alignment:
Q  62 cattatttctaccaactgagttaaactca 90  Q
    |||||||||||||||||||||||||||||    
T  32635932 cattatttctaccaactgagttaaactca 32635904  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 30639442 - 30639488
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacg 92  Q
    |||| ||| |||||||||||||| |||||||||||| ||||||||||    
T  30639442 ccttgcatatattatgcattattcctaccaactgagctaaactcacg 30639488  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 331902 - 331954
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacgaagact 98  Q
    |||| ||| ||||||||||| | ||||||||||||||||| ||||||| ||||    
T  331902 ccttgcatatattatgcattgtctctaccaactgagttaagctcacgaggact 331954  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 34364520 - 34364558
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacga 93  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  34364520 tattatgcattattcctaccaactaagttaaactcacga 34364558  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 41555330 - 41555292
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacga 93  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  41555330 tattatgcattgttcctaccaactgagttaaactcacga 41555292  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 41682403 - 41682448
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcac 91  Q
    |||| ||| ||||||||||||||| ||||||||||||||| |||||    
T  41682403 ccttacatatattatgcattatttataccaactgagttaagctcac 41682448  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 17413359 - 17413395
Alignment:
Q  57 ttatgcattatttctaccaactgagttaaactcacga 93  Q
    |||||||||||| | ||||||||||||||||||||||    
T  17413359 ttatgcattattccaaccaactgagttaaactcacga 17413395  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 17779019 - 17779055
Alignment:
Q  57 ttatgcattatttctaccaactgagttaaactcacga 93  Q
    ||||||||| | |||||||||||||||||||||||||    
T  17779019 ttatgcattgtctctaccaactgagttaaactcacga 17779055  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 35126294 - 35126331
Alignment:
Q  55 tattatgcattatttctaccaactgagttaaactcacg 92  Q
    |||||||||||||  |||||||||||||||||||||||    
T  35126294 tattatgcattatccctaccaactgagttaaactcacg 35126331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 29791821 - 29791773
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacgaa 94  Q
    |||| ||| ||||||| ||| |||||| |||||||||||||||||||||    
T  29791821 ccttacatatattatgtattgtttctatcaactgagttaaactcacgaa 29791773  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 33223913 - 33223861
Alignment:
Q  46 ccttccatctattatgcattatttctaccaactgagttaaactcacgaagact 98  Q
    |||| ||| ||||||||||| ||||||||||||||| ||| ||||||| ||||    
T  33223913 ccttgcatatattatgcattgtttctaccaactgagctaagctcacgaggact 33223861  T

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