View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10260_low_69 (Length: 245)

Name: NF10260_low_69
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10260_low_69
NF10260_low_69
[»] chr5 (13 HSPs)
chr5 (1-224)||(37439639-37439860)
chr5 (105-224)||(37434382-37434500)
chr5 (1-103)||(37701309-37701409)
chr5 (72-224)||(37402368-37402520)
chr5 (72-224)||(37531738-37531890)
chr5 (72-224)||(37592842-37592994)
chr5 (72-224)||(37695233-37695385)
chr5 (155-224)||(37701410-37701479)
chr5 (111-216)||(37394264-37394368)
chr5 (72-224)||(37638384-37638536)
chr5 (72-224)||(37710145-37710297)
chr5 (95-227)||(37427715-37427843)
chr5 (112-224)||(37822583-37822694)
[»] chr4 (1 HSPs)
chr4 (72-224)||(16844366-16844518)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37439639 - 37439860
Alignment:
Q  1 tataagactacattacttaaacagagaagttcaaagtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||    
T  37439639 tataagactacattactcaaacagagaagttcaaattacaaacaaccgtatctatattttttaaagacttgcatcaaattaattcattctatgtgatttg 37439738  T
Q  101 cacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccattgaggttttccagtgaaaaagaatacattat 200  Q
    || ||  ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| ||||||||||||||| ||||||| |||||    
T  37439739 caagggatcaattgtttgttcttttcagtctt-atgttaaatgtatgc-caacaagtctaagaagtcattcaggttttccagtgaagaagaatagattat 37439836  T
Q  201 atcccaacagcaacccgaatattg 224  Q
    ||||||| ||||||||||||||||    
T  37439837 atcccaatagcaacccgaatattg 37439860  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 37434382 - 37434500
Alignment:
Q  105 gactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccattgaggttttccagtgaaaaagaatacattatatcc 204  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  37434382 gactcaattgtttgttcttttcattctta-tgttaaacgtatgctcaacaagtctaagaagccattggggttttccagtgaagaagaatacattatatcc 37434480  T
Q  205 caacagcaacccgaatattg 224  Q
    |||||||||||| |||||||    
T  37434481 caacagcaacccaaatattg 37434500  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 37701309 - 37701409
Alignment:
Q  1 tataagactacattacttaaacagagaagttcaaagtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg 100  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37701309 tataagactacattactcaaa--gagaagttcaaagtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg 37701406  T
Q  101 cac 103  Q
    |||    
T  37701407 cac 37701409  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 37402520 - 37402368
Alignment:
Q  72 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 170  Q
    ||||||||||||||||||| | ||||||||||| |  ||  |||||||||||||||||||||| |||||||  | |  ||||||| ||||| ||||||||    
T  37402520 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtctta-tgttaaacatgttttcaacaattctaacaagccatt 37402422  T
Q  171 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattg 224  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| ||||||    
T  37402421 gaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattg 37402368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 37531738 - 37531890
Alignment:
Q  72 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 170  Q
    ||||||||||||||||||| | ||||||||||| |  ||  |||||||||||||||||||||| |||||||  | |  ||||||| ||||| ||||||||    
T  37531738 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtctta-tgttaaacatgttttcaacaattctaacaagccatt 37531836  T
Q  171 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattg 224  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| ||||||    
T  37531837 gaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattg 37531890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 37592842 - 37592994
Alignment:
Q  72 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 170  Q
    ||||||||||||||||||| | ||||||||||| |  ||  |||||||||||||||||||||| |||||||  | |  ||||||| ||||| ||||||||    
T  37592842 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtctta-tgttaaacatgttttcaacaattctaacaagccatt 37592940  T
Q  171 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattg 224  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| ||||||    
T  37592941 gaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattg 37592994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 37695233 - 37695385
Alignment:
Q  72 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 170  Q
    ||||||||||||||||||| | ||||||||||| |  ||  |||||||||||||||||||||| |||||||  | |  ||||||| ||||| ||||||||    
T  37695233 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtctta-tgttaaacatgttttcaacaattctaacaagccatt 37695331  T
Q  171 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattg 224  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| ||||||    
T  37695332 gaggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattg 37695385  T

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Target: chr5; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 37701410 - 37701479
Alignment:
Q  155 agtctaagaagccattgaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattg 224  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  37701410 agtctaagaagccattgaggttttccagtgaagaagaatacattatatcccaagagcaacccgaatattg 37701479  T

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Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 37394368 - 37394264
Alignment:
Q  111 attgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccattgaggttttccagtgaaaaagaatacattatatcccaacag 210  Q
    |||||||| |||||||| ||||| |||||||  |||  |||||| ||||   ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  37394368 attgtttgatcttttcaatctta-tgttaaacatattttcaacatgtcttgcaagccattggggttttccagtgaagaagaatacattatatcccaacag 37394270  T
Q  211 caaccc 216  Q
    ||||||    
T  37394269 caaccc 37394264  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 37638384 - 37638536
Alignment:
Q  72 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 170  Q
    |||| |||||||||||||| | |||||||||   | |||  ||||| |||||||||| ||||| ||| |||  |||| |||||| ||||   ||||||||    
T  37638384 catccaattaattcattcttctgcgatttgcgatggctctgttgttcgttcttttcaatctta-tgtcaaacatatgttcaacatgtcttgcaagccatt 37638482  T
Q  171 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattg 224  Q
      ||||| |||||||| |||||||||||||||||||| ||||||||||||||||    
T  37638483 cgggtttaccagtgaagaagaatacattatatcccaatagcaacccgaatattg 37638536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 37710145 - 37710297
Alignment:
Q  72 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 170  Q
    |||| |||||||||||||| | |||||||||   | |||  |||||||||||||||| ||||| ||| |||  |||| |||||| |||| | ||||||||    
T  37710145 catccaattaattcattcttctgcgatttgcgatggctctgttgtttgttcttttcaatctta-tgtcaaacatatgttcaacatgtcttacaagccatt 37710243  T
Q  171 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattg 224  Q
      ||||| || ||||| ||||||||||||||||| || ||||||||||||||||    
T  37710244 cgggtttaccggtgaagaagaatacattatatccgaatagcaacccgaatattg 37710297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 37427715 - 37427843
Alignment:
Q  95 gatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccattgaggttttccagtgaaaaagaata 194  Q
    ||||||||||| ||| | ||||||||||||||| |||| ||||||||||| ||||||| |||||||| || |||||  ||||| ||| ||   |||| ||    
T  37427715 gatttgcacgggctctagtgtttgttcttttcaatctt-atgttaaatgtttgctcaaaaagtctaacaaaccattatggtttcccaatg---aagagta 37427810  T
Q  195 cattatatcccaacagcaacccgaatattgtcc 227  Q
    || |||||||||| | || ||| ||||||||||    
T  37427811 caatatatcccaagatcatcccaaatattgtcc 37427843  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 37822583 - 37822694
Alignment:
Q  112 ttgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccattgaggttttccagtgaaaaagaatacattatatcccaacagc 211  Q
    ||||| |||||||||| ||||| ||| |||  |||| |||||| ||||   ||||||||  ||||| |||||||| ||||||||||||||||| || |||    
T  37822583 ttgttcgttcttttcaatctta-tgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattatatccgaatagc 37822681  T
Q  212 aacccgaatattg 224  Q
    |||||||| ||||    
T  37822682 aacccgaagattg 37822694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 16844518 - 16844366
Alignment:
Q  72 catcaaattaattcattct-cggcgatttgcacggactcaattgtttgttcttttcagtcttaatgttaaatgtatgctcaacaagtctaagaagccatt 170  Q
    |||| |||||||||||||| |||||||||||     |||  ||| |||||||||||| ||||| |||||||  || | |||||| ||||   ||| ||||    
T  16844518 catccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatctta-tgttaaacatacgttcaacatgtcttgcaaggcatt 16844420  T
Q  171 gaggttttccagtgaaaaagaatacattatatcccaacagcaacccgaatattg 224  Q
    | |||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  16844419 ggggttttccagtgaagaagaatacattatatcccaagagcaacccgaatattg 16844366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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