View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_8 (Length: 516)
Name: NF10260_low_8
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Complemental strand, 14584081 - 14583594
Alignment:
| Q |
18 |
atctggttcgttatacacattcggttcaagtttcaacgcatgtatattccttggtttccacataaggttgtctttgagttatagtttgtgcagatgatta |
117 |
Q |
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| T |
14584081 |
atctggttcgttatacacattcggttcaagtttcaacgcatgtatattccttggtttccacaaaaggttgtctttgagttatagtttgtgcagatgatta |
14583982 |
T |
|
| Q |
118 |
attagagtgacaagtttatatgtattttatgtattcacctagttgcagacacaattgtcatgataatattaattaccatgatagctgtagaatttattga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14583981 |
attagagtgacaagtttatatgtattttatgtattcacctagttgcagacacaattgtcatgataatattaattaccatgatagctgtagaatttattga |
14583882 |
T |
|
| Q |
218 |
tcaaaggcttgatttgattctttgcattagattagttgcaaaaactcaatgatcaaccaaacttgtgagagagtaagtgagtcctttttattatctttat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
14583881 |
tcaaaggcttgatttgattctttgcattagattagttacaaaaactcaatgatcaaccaaacttgtgagagagtgagtgagtcctttttattatcttaat |
14583782 |
T |
|
| Q |
318 |
gtttacttactattctctatcattcagacaatcttattttatttatcattctcttctcaagtctcatctactctcacaaactcaccaaagttagaaatac |
417 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14583781 |
gtttacttaccattctctatcattcagacaatcttattttatttatcattctcttctcaagtctcatctactctcacaaactcaccaaagttagaaatac |
14583682 |
T |
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| Q |
418 |
attttcactttctgtctatcattctatcattctctttactatcattctatctcatccagacaatcttattttattcatcattctctct |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14583681 |
attttcactttctgtctatcattctatcattctctttactatcattctatctcatccagacaatcttattttattcatcattctctct |
14583594 |
T |
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