View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_82 (Length: 227)
Name: NF10260_low_82
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 28914931 - 28914815
Alignment:
| Q |
103 |
gttctattattgtagtagttaaggaacctacaatcgaggaatataatttctccatcggtgttaatctcctgaagaaaggaggaaatcatatttgatgaca |
202 |
Q |
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| T |
28914931 |
gttctattattgtagtagttaaggaacctacaattgaggaatacaatttctccctcagtgttaatctcctgaacaaaggaggaaatcatatttgatgaca |
28914832 |
T |
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| Q |
203 |
tcaacttaacctatgct |
219 |
Q |
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| T |
28914831 |
tcaacttaacctatgct |
28914815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 28915108 - 28914992
Alignment:
| Q |
3 |
atcagataacatata---attgaatagttaagaatcatgtatctatatttttatgtattttgtagtttagtagcttaaaaaatccaaaacaatcgtacta |
99 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |
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| T |
28915108 |
atcagataacatatagtaattgaatagttaagaatcatatatctatatttttatgtatttcgtagtttagtagctcaaaaaatccaaaacaatcgcacta |
28915009 |
T |
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| Q |
100 |
aatgttctattattgta |
116 |
Q |
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||||||||||||||||| |
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| T |
28915008 |
aatgttctattattgta |
28914992 |
T |
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