View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_83 (Length: 226)
Name: NF10260_low_83
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 37316009 - 37316193
Alignment:
| Q |
22 |
cttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgatacatttggaggcaaag |
121 |
Q |
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| T |
37316009 |
cttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgatacatttggaggcaaag |
37316108 |
T |
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| Q |
122 |
ttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgc |
206 |
Q |
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| T |
37316109 |
ttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgc |
37316193 |
T |
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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 19207188 - 19207097
Alignment:
| Q |
115 |
ggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgc |
206 |
Q |
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| T |
19207188 |
ggcaaagttccaggcttgagtgcatctgggtgtgtgtagtatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgc |
19207097 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 16175294 - 16175340
Alignment:
| Q |
22 |
cttcccattttgtccccaagccaaccaaagaaaagttggcctgctag |
68 |
Q |
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| T |
16175294 |
cttcccattttgtccccaagccaaccaaagaataattggcctgctag |
16175340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 33115203 - 33115133
Alignment:
| Q |
22 |
cttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatt |
92 |
Q |
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| T |
33115203 |
cttcccattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctccactgaaagcaacaccatt |
33115133 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 38884061 - 38883979
Alignment:
| Q |
37 |
ccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgatacatttggaggcaa |
119 |
Q |
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| T |
38884061 |
ccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgatacattgggaggcaa |
38883979 |
T |
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