View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_86 (Length: 221)
Name: NF10260_low_86
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_86 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5032739 - 5032959
Alignment:
| Q |
1 |
aactatgggcactaacacatgcattggacatgatactcatttagaaaccaataataatttcagaaaatgaaaatggtagaatgtaactatatgtgtcgat |
100 |
Q |
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| T |
5032739 |
aactctgggcactaacacatgcattggacatgatactcatgtagaaaccaataataatttcagaaaatgaaaatgatagaatgtaactatatgtgtcgat |
5032838 |
T |
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| Q |
101 |
gtcggtatcatgacaacaaaatgggagagtctgttttgttttgttatcttcgaatctatccttttttgtgaaaccaaaatgtaccattttttaaccttat |
200 |
Q |
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| T |
5032839 |
gtcggtatcatgacaacaaaatggaagagtctgttttgttttgttatcttcgaatctatccttttttgtgaaaccaaaatgtaccattttttaaccttat |
5032938 |
T |
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| Q |
201 |
gtcctattctgttatactttt |
221 |
Q |
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| T |
5032939 |
gtcctattctgttatactttt |
5032959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 5038673 - 5038769
Alignment:
| Q |
125 |
gagagtctgttttgttttgttatcttcgaatctatccttttttgtgaaaccaaaatgtaccattttttaaccttatgtcctattctgttatactttt |
221 |
Q |
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| T |
5038673 |
gagagtctgttttgttttgttatcttcgactctatccttttttgtgaaaccaaaatgcaccatattttaaccttatgtcctattctgttatactttt |
5038769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 5038489 - 5038596
Alignment:
| Q |
14 |
aacacatgcattggacatgatactcatttagaaaccaataataatttcagaaaatgaaaatggtagaatgtaactatatgtgtcgatgtcggtatcatga |
113 |
Q |
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|||||| || ||||||| |||| |||| ||||||| || |||| ||||| ||| |||| ||| ||||||||||||| ||||||| | ||||| ||||||| |
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| T |
5038489 |
aacacaggcgttggacaagataatcatgtagaaacaaacaatagtttcaaaaactgaatatgatagaatgtaactagatgtgtcaacgtcggcatcatga |
5038588 |
T |
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| Q |
114 |
caacaaaa |
121 |
Q |
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|||||||| |
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| T |
5038589 |
caacaaaa |
5038596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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