View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_87 (Length: 217)
Name: NF10260_low_87
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 47712765 - 47712566
Alignment:
| Q |
1 |
agtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccgttgaggaaggttttggagttgcctga |
100 |
Q |
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| T |
47712765 |
agtatgaaggtgtggaggaggcgcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccattgaggaaggttttggagttgcctga |
47712666 |
T |
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| Q |
101 |
ggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcatgataaa |
200 |
Q |
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| T |
47712665 |
ggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcatgataaa |
47712566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 19795866 - 19795668
Alignment:
| Q |
1 |
agtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccgttgaggaaggttttggagttgcctga |
100 |
Q |
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| T |
19795866 |
agtatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcggttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcctga |
19795767 |
T |
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| Q |
101 |
ggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcatgataa |
199 |
Q |
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| T |
19795766 |
ggtgtttattggtgctaatcaatggggtttgattccatacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataa |
19795668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 19785723 - 19785919
Alignment:
| Q |
3 |
tatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccgttgaggaaggttttggagttgcctgagg |
102 |
Q |
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| T |
19785723 |
tatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagttgcctgagg |
19785822 |
T |
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| Q |
103 |
tgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcatgataa |
199 |
Q |
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| T |
19785823 |
tgtttattggtgctaatcaatggggtttgattccttacaatagagttgcttctgtggcgatgaagttttataaggaaaagtttttgaagcatgataa |
19785919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 15835171 - 15834977
Alignment:
| Q |
3 |
tatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccgttgaggaaggttttggagttgcctgagg |
102 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||| |
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| T |
15835171 |
tatgaaggtgtggaggaggcgcattatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggcgttgcaattgcctgagg |
15835072 |
T |
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| Q |
103 |
tgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcatgat |
197 |
Q |
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|||||||||||||||||| |||| ||||||||||| || |||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
15835071 |
tgtttattggggctaatcaatggggtttgattccttataatagggttgcttctgtggccatggagttttataaggagaagtttttgaagcatgat |
15834977 |
T |
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