View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10260_low_88 (Length: 213)
Name: NF10260_low_88
Description: NF10260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10260_low_88 |
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| [»] scaffold0325 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 18069299 - 18069108
Alignment:
| Q |
5 |
agtggagtagcataggaggaataacaggagtttgatggttgtgtttttcgttgagaacagagctttgttttccaccatcagacaattttagatctttggt |
104 |
Q |
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|||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
18069299 |
agtggagtcgcatgggaggaataaaaggagtttgatggttgtgtttttcgttgagaacagagctttgttttccaccattagacaattttagagctttggt |
18069200 |
T |
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| Q |
105 |
agttaacagtaagccctttgttaaagggaacaaaatgattttagaatttaatatagttgacttgtcaaatgcaaaatcaatcgtgggatatg |
196 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18069199 |
agttaacagtaagcccttcgttaaagggaacaaaatgattttagaatttaatatagttgacttgtcaaatacaaaatcaatcgtgggatatg |
18069108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 24900759 - 24900950
Alignment:
| Q |
5 |
agtggagtagcataggaggaataacaggagtttgatggttgtgtttttcgttgagaacagagctttgttttccaccatcagacaattttagatctttggt |
104 |
Q |
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|||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
24900759 |
agtggagtcgcatgggaggaataaaaggagtttgatggttgtgtttttcgttgagaacagagctttgttttccaccattagacaattttagagctttggt |
24900858 |
T |
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| Q |
105 |
agttaacagtaagccctttgttaaagggaacaaaatgattttagaatttaatatagttgacttgtcaaatgcaaaatcaatcgtgggatatg |
196 |
Q |
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| T |
24900859 |
agttaacagtaagcccttcgtaaaagggaacaaaatgattttagaatttaatatagttgacttgtcaaatgcaaaatcaattgtgggatatg |
24900950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 52266992 - 52267183
Alignment:
| Q |
5 |
agtggagtagcataggaggaataacaggagtttgatggttgtgtttttcgttgagaacagagctttgttttccaccatcagacaattttagatctttggt |
104 |
Q |
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|||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |
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| T |
52266992 |
agtggagtcgcatgggaggaataaaaggagtttgatggttgtgtttttcgttgagaacagatctttgttttccaccatcaaacaattttagagctttggt |
52267091 |
T |
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| Q |
105 |
agttaacagtaagccctttgttaaagggaacaaaatgattttagaatttaatatagttgacttgtcaaatgcaaaatcaatcgtgggatatg |
196 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52267092 |
agttaacagtaagccctttgttaaaggtaataaaatgattttagaatttaatatagttgacttgtcaaatgcaaaatcaatcgtgggatatg |
52267183 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 10476 - 10285
Alignment:
| Q |
5 |
agtggagtagcataggaggaataacaggagtttgatggttgtgtttttcgttgagaacagagctttgttttccaccatcagacaattttagatctttggt |
104 |
Q |
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|
|||||||| |||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |
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| T |
10476 |
agtggagtcgcatgggaggaagaaagggagtttgatgattgtgtttttcgttgagaacagagctttgttttctaccatcaaacaattttagagctttggt |
10377 |
T |
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| Q |
105 |
agttaacagtaagccctttgttaaagggaacaaaatgattttagaatttaatatagttgacttgtcaaatgcaaaatcaatcgtgggatatg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10376 |
agttaacagtaagccctttgttaaagggaacaaaatgattttagaatttaatatagttgacttgtcaaatgcaaaatcaatcgtgggatatg |
10285 |
T |
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