View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_high_1 (Length: 810)

Name: NF10261A_high_1
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_high_1
NF10261A_high_1
[»] chr2 (1 HSPs)
chr2 (19-789)||(41822377-41823152)


Alignment Details
Target: chr2 (Bit Score: 670; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 19 - 789
Target Start/End: Original strand, 41822377 - 41823152
Alignment:
Q  19 acatcacaaacaactactgaaagaacnnnnnnn-tgaactaaaaatacgaggtaaagttcatcatacataacagctcatcactctgcatcacctaaaaat 117  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41822377 acatcacaaacaactactgaaagaacaaaaaaaatgaactaaaaatacgaggtaaagttcatcatacataacagctcatcactctgcatcacctaaaaat 41822476  T
Q  118 acaattgctaactagaggaattagaacttaaatttcaaaatcattaaacacaataattgaaaatatgtagaggaaataggacaaaaaatggtatacctag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41822477 acaattgctaactagaggaattagaacttaaatttcaaaatcattaaacacaataattgaaaatatgtagaggaaataggacaaaaaatggtatacctag 41822576  T
Q  218 catccttgaagaaagtgcaaattggtattctcatccaatcacctatagaaaacaaactctctttctctgccatctctgaagtgccaattcactgttttag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41822577 catccttgaagaaagtgcaaattggtattctcatccaatcacctatagaaaacaaactctctttctctgccatctctgaagtgccaattcactgttttag 41822676  T
Q  318 gtgaaaaacagaagagagttacaatagaacaagaagttgctgaagagttataaagttagtgatnnnnnnnncg----ttagaagaaacaaaaagttggtc 413  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||              |||||||||||||||||||||||    
T  41822677 gtgaaaaacagaagagagttacaatagaacaagaagttgttgaagagttataaagttagtgataaaaaaaaaaaaaattagaagaaacaaaaagttggtc 41822776  T
Q  414 caatgtttagcaatgtgatattaagagtatatcataaattaaaggcaagaaagcacatatatatatgctccatattaattatgtggtcaaatactgacca 513  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41822777 caatgtttagcaatgtgatattaatagtatatcataaattaaaggcaagaaagcacatatatatattctccatattaattatgtggtcaaatactgacca 41822876  T
Q  514 acaaaataattgaatacgtatcaaggaataagcatcaaattaacaacagtgttggaaagataataaaatgctttaacagaatcaaaatgaatagaccctc 613  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41822877 acaaaataattgaatatgtatcaaggaataagcatcaaattaataacagtgatggaaagataataaaatgctttaacagaatcaaaatgaatagaccctc 41822976  T
Q  614 tcactcaaacaaagaacacaaacgatataaaccatcagaatgaaaaggaaaggtgaaaagcatgtgaaaaataacagtaactcaaggttttgaaactcca 713  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41822977 tcactcaaacaaaaaacacaaacgatataaaccatcagaatgaaaaggaaaggtgaaaagcatgtgaaaaataacagtaactcaaggttttgaaactcca 41823076  T
Q  714 aactctagctatgaaatcaatggaaggactcaactgaaattaacaggtgaaaagcatgtaaaatctgcaataatct 789  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41823077 aactctagctatgaaatcaatggaaggactcaactgaaattaacaggtgaaaagcatgtaaaatctgcaataatct 41823152  T

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