View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_high_3 (Length: 574)
Name: NF10261A_high_3
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 545
Target Start/End: Complemental strand, 17472060 - 17471537
Alignment:
| Q |
6 |
actgagaagaaatgtttaaattatcaacaaatctctattaaatagtgcttaaaagcatgtttgaactttctgtaaagaaatactaatgcaagtacgatca |
105 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| || | ||||||||||||||| ||||||| |
|
|
| T |
17472060 |
actgagaagtaatgttaaaattataaacaaatctctattaaatagtgcttaaaagcatgattgaagtttctttacacaaatactaatgcaagaacgatca |
17471961 |
T |
|
| Q |
106 |
acacacatctatgaaacatttacataaacatggatatcagaccaatactaacacatcgacaccgtcaataatctnnnnnnntaaaatatttgaatccact |
205 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||| | |||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17471960 |
tcacatatctatgaa-catttacacaaacatgaacatcaaaccaatactaacacgtcgacaccgtcaataatctaagaaaataaaatatttgaatccact |
17471862 |
T |
|
| Q |
206 |
taccatgtaacacttgagactactattttcatctaattgatttttactatatcatatcttcgtgattgaaaatatgatcttgatttaaaatatgctctct |
305 |
Q |
| |
|
|||| | | ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
17471861 |
taccttattacacttgagactatgattttcaactaattgattttcactatatcatatcttcgtgattgaaaatatgatcgtgatttaaaatatgctccct |
17471762 |
T |
|
| Q |
306 |
aacaacctgaagagaaagnnnnnnnntggtgttaaagcttggaaggaacgtatgaaaaagaagaaggataaacaaatatgttcattttttcaggtttaac |
405 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
17471761 |
aacaacctgaagagaaa-aaaaaaaatggtgttaaagcttg------------gaaaaaaaagaaggacaaa-aaatatgttcattttttcaggtttaac |
17471676 |
T |
|
| Q |
406 |
tatgaaacaaattnnnnnnntgcaatgaaagttaatagcatttacacgccactaaaccatacattttttagtcagattttacattttaatcgcagaaaaa |
505 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||||| |||||||| |
|
|
| T |
17471675 |
catgaaacaaatt-aaaaaatgcaatgaaagttaatagcatttacacgccattaaaccattcattttttagtcataatttatgttttaatcacagaaaaa |
17471577 |
T |
|
| Q |
506 |
taagaaggaatattctttgatgagagagatatgctgtcat |
545 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
17471576 |
taaggaggaatattcttcgatgagagagatatgctgtcat |
17471537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 545
Target Start/End: Original strand, 17581154 - 17581677
Alignment:
| Q |
6 |
actgagaagaaatgtttaaattatcaacaaatctctattaaatagtgcttaaaagcatgtttgaactttctgtaaagaaatactaatgcaagtacgatca |
105 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| || | ||||||||||||||| ||||||| |
|
|
| T |
17581154 |
actgagaagtaatgttaaaattataaacaaatctctattaaatagtgcttaaaagcatgattgaagtttctttacacaaatactaatgcaagaacgatca |
17581253 |
T |
|
| Q |
106 |
acacacatctatgaaacatttacataaacatggatatcagaccaatactaacacatcgacaccgtcaataatctnnnnnnntaaaatatttgaatccact |
205 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||| | |||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17581254 |
tcacatatctatgaa-catttacacaaacatgaacatcaaaccaatactaacacgtcgacaccgtcaataatctaagaaaataaaatatttgaatccact |
17581352 |
T |
|
| Q |
206 |
taccatgtaacacttgagactactattttcatctaattgatttttactatatcatatcttcgtgattgaaaatatgatcttgatttaaaatatgctctct |
305 |
Q |
| |
|
|||| | | ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
17581353 |
taccttattacacttgagactatgattttcaactaattgattttcactatatcatatcttcgtgattgaaaatatgatcgtgatttaaaatatgctccct |
17581452 |
T |
|
| Q |
306 |
aacaacctgaagagaaagnnnnnnnntggtgttaaagcttggaaggaacgtatgaaaaagaagaaggataaacaaatatgttcattttttcaggtttaac |
405 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
17581453 |
aacaacctgaagagaaa-aaaaaaaatggtgttaaagcttg------------gaaaaaaaagaaggacaaa-aaatatgttcattttttcaggtttaac |
17581538 |
T |
|
| Q |
406 |
tatgaaacaaattnnnnnnntgcaatgaaagttaatagcatttacacgccactaaaccatacattttttagtcagattttacattttaatcgcagaaaaa |
505 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||||| |||||||| |
|
|
| T |
17581539 |
catgaaacaaatt-aaaaaatgcaatgaaagttaatagcatttacacgccattaaaccattcattttttagtcataatttatgttttaatcacagaaaaa |
17581637 |
T |
|
| Q |
506 |
taagaaggaatattctttgatgagagagatatgctgtcat |
545 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
17581638 |
taaggaggaatattcttcgatgagagagatatgctgtcat |
17581677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 573
Target Start/End: Complemental strand, 43381452 - 43380914
Alignment:
| Q |
23 |
aaattatcaacaaatctctattaaatagtgcttaaaagcatgtttgaactttctgtaaagaaatactaatgcaagtacgatcaacacacatctatgaaac |
122 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| ||||||||||| | ||| ||||||||||| ||||||| | |||||||| || |
|
|
| T |
43381452 |
aaattataaacaaatctctattaaatagtggttaa-----------aactttctgtacacaaacactaatgcaagaacgatcagatcgcatctatg-aat |
43381365 |
T |
|
| Q |
123 |
atttacataaacatggatatcagaccaatactaacacatcgacaccgtcaataatctnnnnnnntaaaatatttgaatccacttaccatgtaacacttga |
222 |
Q |
| |
|
||||||| ||| | || | ||| |||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
43381364 |
atttacacaaatacgggtttcaaaccaatactaacacgttgacactgtcaataatctaagaaaataaaatatttgaatccacttaccttgttacacttga |
43381265 |
T |
|
| Q |
223 |
gactactattttcatctaattgatttttactatatcatatcttcgtgattgaaaatatgatcttgatttaaaatatgctctctaacaacctgaagagaaa |
322 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43381264 |
gactatgattttcatctaattgatttttactatatcatatctttatgattgaaaatatgatcgtgatttaaaatatgctccctaacaacctgaagagaaa |
43381165 |
T |
|
| Q |
323 |
gnnnnnnnntggtgttaaagcttggaaggaacgtatgaaaaagaagaaggataaacaaatatgttcattttttcaggtttaactatgaaacaaattnnnn |
422 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43381164 |
--aaaagaatggtgttaaaacttggaaggaacatatggaaaagaagaa-gataaaaaaatatgttcattttttcagatttaactatgaaacaaatt-aaa |
43381069 |
T |
|
| Q |
423 |
nnntgcaatgaaag----ttaatagcatttacacgccactaaaccatacattttttagtcagattttac-attttaatcgcagaaaaataagaaggaata |
517 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||| ||||| |||||||| | ||||| |||||| |||| |
|
|
| T |
43381068 |
atatgcaatgaaagttaattaatagcatttacacaccattaaaccattcattttttagtcaccatttacgtttttaatc-aaaaaaaaaaagaagaaata |
43380970 |
T |
|
| Q |
518 |
ttctttgatgagagagatatgctgtcatnnnnnnnttaaatgaataattgtatttg |
573 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||| ||||| |
|
|
| T |
43380969 |
ttctttgatgagagagatatgttgtcataaaagaattaaatgaataattgcatttg |
43380914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University