View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_102 (Length: 340)
Name: NF10261A_low_102
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_102 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 434495 - 434834
Alignment:
| Q |
1 |
acatgtcaaatattaatccttaatccataattacacatttcagtgaaaagttgattcaattgagactaacgcccaattcaatggcaatggtataactaat |
100 |
Q |
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| T |
434495 |
acatgtcaaatattaatccttaatccataattacacatttcagtgaaaatttgattcaattgagactaacgcccaattcaatggcaatggtataactaat |
434594 |
T |
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| Q |
101 |
cttcaattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccat |
200 |
Q |
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| T |
434595 |
cttcaattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccat |
434694 |
T |
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| Q |
201 |
aatcttagatgaatcgaatttaattctaacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattg |
300 |
Q |
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| T |
434695 |
aatcttagatgaatcgaatttaattctcacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgaaaatctgggcgacatccatgaaattg |
434794 |
T |
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| Q |
301 |
gaagacaacgaaaa-ccctaatcttaaaatgagatccatga |
340 |
Q |
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| T |
434795 |
gaagacgacgaaaatccctaatctt-aaatgagatccatga |
434834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 43485682 - 43485786
Alignment:
| Q |
1 |
acatgtcaaatattaatccttaatccataattacacatttcagtgaaaagttgattcaattgagactaacgcccaattcaatggcaatggtataactaat |
100 |
Q |
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| T |
43485682 |
acatgtcaaattttaatccttaatccagaattacacagctcagtgtaaatttgattcagttgagactaaagctcaattcaatggcaatggtataactaat |
43485781 |
T |
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| Q |
101 |
cttca |
105 |
Q |
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| T |
43485782 |
cttca |
43485786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 47870624 - 47870681
Alignment:
| Q |
19 |
cttaatccataattacacatttcagtgaaaagttgattcaattgagactaacgcccaa |
76 |
Q |
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| T |
47870624 |
cttaatccagaattacataattcagtgaaaatttgattcaattgagactaaagcccaa |
47870681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 17512942 - 17512780
Alignment:
| Q |
65 |
actaacgcccaattcaatggcaatggtataa--ctaatcttcaattaatttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaa |
162 |
Q |
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| T |
17512942 |
actaacgcctaattcaatggcaatggtacaaaactaatgttcaatgagattgaatcccttggcttcaataagttaaaatcaattgagactcaatgacaaa |
17512843 |
T |
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| Q |
163 |
ggtataactaactgcataatttatgaatttggatccataatcttagatgaatcgaatttaatt |
225 |
Q |
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| T |
17512842 |
ggtacaactaatcgtagaatttatgaatttgaagccctaatcttaaatgaattgaattcaatt |
17512780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 17512754 - 17512681
Alignment:
| Q |
231 |
aaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaag |
304 |
Q |
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| T |
17512754 |
aaaaacaataactaactgaaacaaacgcgaaaaactacatttgaaaatctaggcgacatccatgaaattggaag |
17512681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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