View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_107 (Length: 336)
Name: NF10261A_low_107
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_107 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 44535079 - 44535336
Alignment:
| Q |
8 |
aagaatatagaggaaaaggttactaccaacatgagggagaagatgagaaactcatcaacttcattatcatatgatcataatgaggtaaagaaagttgagg |
107 |
Q |
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| T |
44535079 |
aagaaaatagaggaaaaggttactaccaacatgagggagaagatgagaaactcatcaacttcattatcatatgatcataatgaggtaaagaaagttgagg |
44535178 |
T |
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| Q |
108 |
actcctttgaaacaaataagaagctagagaggaagactacagaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgat |
207 |
Q |
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| T |
44535179 |
actcctttgaaacaaataagaagctagagaggaagactacagaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgat |
44535278 |
T |
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| Q |
208 |
tcaaaggcttcaatccattgagaattatgagaaaatgcttgcaaggggtctctagcac |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44535279 |
tcaaaggcttcaatccattgagaattatgagaaaatgcttgcaaggggtctctagcac |
44535336 |
T |
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Back To:
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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 2579963 - 2579856
Alignment:
| Q |
148 |
agaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgattcaaaggcttcaatccattgagaattatgagaaaatgctt |
247 |
Q |
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| T |
2579963 |
agaagatatcaatgctagtgctgatgccttcattaagaactttaggcagcagcttatgcttcagaggcttcaatctattgagaattatgagaaaatgctt |
2579864 |
T |
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| Q |
248 |
gcaagggg |
255 |
Q |
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| T |
2579863 |
gctagggg |
2579856 |
T |
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