View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_108 (Length: 333)

Name: NF10261A_low_108
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_108
NF10261A_low_108
[»] chr7 (3 HSPs)
chr7 (26-217)||(32656059-32656251)
chr7 (43-159)||(32662600-32662716)
chr7 (165-218)||(32661098-32661151)
[»] chr8 (1 HSPs)
chr8 (165-217)||(45400577-45400629)
[»] chr3 (7 HSPs)
chr3 (165-215)||(29619698-29619748)
chr3 (160-218)||(51654891-51654949)
chr3 (165-217)||(35184363-35184415)
chr3 (165-215)||(13454563-13454613)
chr3 (165-215)||(49808420-49808470)
chr3 (160-218)||(51654828-51654886)
chr3 (165-217)||(13458930-13458982)
[»] chr1 (6 HSPs)
chr1 (165-215)||(34108963-34109013)
chr1 (78-125)||(35364063-35364110)
chr1 (165-215)||(19767060-19767110)
chr1 (165-215)||(29307756-29307806)
chr1 (165-215)||(34109388-34109438)
chr1 (165-215)||(40236649-40236699)
[»] chr2 (6 HSPs)
chr2 (160-215)||(45061089-45061144)
chr2 (165-215)||(25647880-25647930)
chr2 (165-215)||(41354601-41354651)
chr2 (165-215)||(45060929-45060979)
chr2 (165-215)||(45158782-45158832)
chr2 (165-217)||(30409813-30409865)
[»] scaffold0506 (1 HSPs)
scaffold0506 (165-215)||(901-951)
[»] scaffold0160 (1 HSPs)
scaffold0160 (165-215)||(35568-35618)
[»] chr5 (2 HSPs)
chr5 (165-215)||(2396901-2396951)
chr5 (165-215)||(39871325-39871375)
[»] chr4 (2 HSPs)
chr4 (165-215)||(10257625-10257675)
chr4 (165-215)||(40912393-40912443)
[»] chr6 (2 HSPs)
chr6 (160-220)||(22275338-22275398)
chr6 (165-217)||(25000209-25000261)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 32656059 - 32656251
Alignment:
Q  26 taattttatctcatgacatatagtttgtttcaatgtatcnnnnnnnncaatgcagaaggtgaatgttcaatccataaaa-gcaatcagatagatttcaaa 124  Q
    |||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  32656059 taattttatctcatgacatatactttgtttcaatgtatcttttttttcaatgcagaaggtgaatgttcaatccataaaaagcaattagatagatttcaaa 32656158  T
Q  125 acattcactagaaattgattgtcatgatagttgcttcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 217  Q
    |||||||||||||  ||||| ||||||| |||| ||||| |||||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  32656159 acattcactagaatgtgattttcatgatcgttgtttcttattatctataaaagttaactcgaaagttaaattttaccctaattttaacctaaa 32656251  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 32662600 - 32662716
Alignment:
Q  43 atatagtttgtttcaatgtatcnnnnnnnncaatgcagaaggtgaatgttcaatccataaaagcaatcagatagatttcaaaacattcactagaaattga 142  Q
    ||||| ||||||||||||||||        |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  |||    
T  32662600 atatactttgtttcaatgtatcttttttttcaatgcagaaggtgaatgttcaatccgtaaaagcaattagatagatttcaaaacattcactagaaggtga 32662699  T
Q  143 ttgtcatgatagttgct 159  Q
    |||||||||| ||||||    
T  32662700 ttgtcatgatcgttgct 32662716  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 32661098 - 32661151
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaac 218  Q
    ||||||||||||||||||||||||| | ||||||  ||||||||||||||||||    
T  32661098 ttatctataaaagttaacccgaaagcttatttttgccctaattttaacctaaac 32661151  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 45400629 - 45400577
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 217  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  45400629 ttatatataaaagttaacccgtaagttaatttttaacctaattttaacctaaa 45400577  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 29619748 - 29619698
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||| ||| ||||||||||||| |||||||||||||||    
T  29619748 ttatatataaaagttaatccgtaagttaatttttaacctaattttaaccta 29619698  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 51654891 - 51654949
Alignment:
Q  160 tcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaac 218  Q
    ||||||||| ||| |||||||||||||||| | ||||||  ||||||||||||||||||    
T  51654891 tcttcttatatattaaagttaacccgaaagcttatttttgccctaattttaacctaaac 51654949  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 35184363 - 35184415
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 217  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||||    
T  35184363 ttatatataaaagttaacccgtaagccaatttttaacctaattttaacctaaa 35184415  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 13454613 - 13454563
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  13454613 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 13454563  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 49808470 - 49808420
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||| ||| |||| |||||||| |||||||||||||||    
T  49808470 ttatatataaaagttaatccgtaagtcaatttttaacctaattttaaccta 49808420  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 51654828 - 51654886
Alignment:
Q  160 tcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaac 218  Q
    ||||||||| ||| |||||||||||||||  | ||||||  ||||||||||||||||||    
T  51654828 tcttcttatatattaaagttaacccgaaaacttatttttgccctaattttaacctaaac 51654886  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 13458982 - 13458930
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 217  Q
    |||| ||||||||||||| || |||  |||||||| |||||||||||||||||    
T  13458982 ttatatataaaagttaactcgtaagccaatttttaacctaattttaacctaaa 13458930  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 34109013 - 34108963
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||| |||||||| |||||||||||||||    
T  34109013 ttatatataaaagttaacccgtaagtcaatttttaacctaattttaaccta 34108963  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 35364110 - 35364063
Alignment:
Q  78 cagaaggtgaatgttcaatccataaaagcaatcagatagatttcaaaa 125  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||||    
T  35364110 cagaaggtgaatgttcaatacataaaagcaattagagggatttcaaaa 35364063  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 19767110 - 19767060
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  19767110 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 19767060  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 29307756 - 29307806
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  29307756 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 29307806  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 34109438 - 34109388
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  34109438 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 34109388  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 40236699 - 40236649
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  40236699 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 40236649  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 45061144 - 45061089
Alignment:
Q  160 tcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  45061144 tctttttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 45061089  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 25647880 - 25647930
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  25647880 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 25647930  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 41354601 - 41354651
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||| | |||| |||||||| |||||||||||||||    
T  41354601 ttatatataaaagttaacctgtaagtcaatttttaacctaattttaaccta 41354651  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 45060979 - 45060929
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  45060979 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 45060929  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 45158832 - 45158782
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  45158832 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 45158782  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 30409865 - 30409813
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 217  Q
    |||| |||||||||||||||| || | |||||||| ||||||||||| |||||    
T  30409865 ttatatataaaagttaacccgtaaatcaatttttaacctaattttaatctaaa 30409813  T

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Target: scaffold0506 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0506
Description:

Target: scaffold0506; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 951 - 901
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  951 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 901  T

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Target: scaffold0160 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 35568 - 35618
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  35568 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 35618  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 2396951 - 2396901
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  2396951 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 2396901  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 39871325 - 39871375
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  39871325 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 39871375  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 10257675 - 10257625
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| |||  |||||||| |||||||||||||||    
T  10257675 ttatatataaaagttaacccgtaagccaatttttaacctaattttaaccta 10257625  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 40912443 - 40912393
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaaccta 215  Q
    |||| |||||||||||||||| || ||||||||||  ||||||||||||||    
T  40912443 ttatatataaaagttaacccgtaaattaatttttaatctaattttaaccta 40912393  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 22275338 - 22275398
Alignment:
Q  160 tcttcttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaactc 220  Q
    ||||||||| ||| ||||||||||||||||   |||||  ||||||||||||| |||||||    
T  22275338 tcttcttatatattaaagttaacccgaaagcatattttagtcctaattttaacttaaactc 22275398  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 25000209 - 25000261
Alignment:
Q  165 ttatctataaaagttaacccgaaagttaatttttatcctaattttaacctaaa 217  Q
    |||| ||| |||||||||||||| ||||||| ||  |||||||||||||||||    
T  25000209 ttatttattaaagttaacccgaaggttaattgttgccctaattttaacctaaa 25000261  T

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