View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_109 (Length: 332)

Name: NF10261A_low_109
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_109
NF10261A_low_109
[»] chr4 (10 HSPs)
chr4 (20-175)||(37179999-37180154)
chr4 (20-175)||(37181583-37181738)
chr4 (20-175)||(37189700-37189855)
chr4 (20-171)||(37187682-37187833)
chr4 (238-332)||(37180220-37180314)
chr4 (238-332)||(37189540-37189634)
chr4 (123-171)||(38704220-38704268)
chr4 (238-310)||(37181445-37181517)
chr4 (239-326)||(37187901-37187988)
chr4 (238-310)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (35-153)||(27096701-27096816)
chr5 (35-153)||(27103004-27103119)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 37179999 - 37180154
Alignment:
Q  20 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179999 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37180098  T
Q  120 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180099 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37180154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 37181738 - 37181583
Alignment:
Q  20 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181738 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37181639  T
Q  120 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181638 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37181583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 37189855 - 37189700
Alignment:
Q  20 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189855 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37189756  T
Q  120 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189755 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37189700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 37187682 - 37187833
Alignment:
Q  20 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 119  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||    
T  37187682 gaagtggctgctggcaatggtggaatgttgagagatggaattgttggaaaatttgtaggaaagctaggaagtggtggcatagtgagtttaggcatagaag 37187781  T
Q  120 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 171  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37187782 ggatagtaggcaatggaggaagatttccctgaggcatatttggaattgaagg 37187833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 238 - 332
Target Start/End: Original strand, 37180220 - 37180314
Alignment:
Q  238 caaaagatgatgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtttga 332  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180220 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtttga 37180314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 37189634 - 37189540
Alignment:
Q  238 caaaagatgatgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtttga 332  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37189634 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatcaaggatttgaatattgccattgatagtttga 37189540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 38704220 - 38704268
Alignment:
Q  123 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704220 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 38704268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 37181517 - 37181445
Alignment:
Q  238 caaaagatgatgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttg 310  Q
    |||||||||  ||||||||||||||||| |||| ||||| ||||| |||||||||||||  ||||||||||||    
T  37181517 caaaagatggcgagcttctaggctcatgcttgacattgtgacaacaagaagtaaagttgcaatgaaggatttg 37181445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 37187901 - 37187988
Alignment:
Q  239 aaaagatgatgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgata 326  Q
    ||||||||  ||||||||||||||||| |||| || |||||||| |||||||||| | ||||||||||||||  |  |||||||||||    
T  37187901 aaaagatggcgagcttctaggctcatgcttgacatggtcacaacaagaagtaaagctatgatgaaggatttgcttgatgccattgata 37187988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 38704293 - 38704369
Alignment:
Q  238 caaaagatgatgagcttctaggctcatgtttgatattgtcacaactagaagta----aagttgtgatgaaggatttg 310  Q
    |||||||||| ||||||||||| ||||| |||| ||||||||||| |||||||    |||||||||| |||||||||    
T  38704293 caaaagatgacgagcttctaggttcatgcttgacattgtcacaacaagaagtaaattaagttgtgattaaggatttg 38704369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 27096816 - 27096701
Alignment:
Q  35 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 134  Q
    |||||||||| |||||||||||||| |||||||   || |||||||  || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27096816 aatggtggaaagttgagagatggaagtgttgga---ttggtaggaatgctaggaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatg 27096720  T
Q  135 gaggaagatttccttgagg 153  Q
    |||||| ||| ||||||||    
T  27096719 gaggaacattaccttgagg 27096701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 27103119 - 27103004
Alignment:
Q  35 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 134  Q
    |||||||||| |||||||||||||| |||||||   || || ||||  || |||||||||||||||||||| |||||||  |||||||| ||||||||||    
T  27103119 aatggtggaaagttgagagatggaagtgttgga---ttggttggaatgctaggaagtggtggcatagtgagcttaggcactgaagggatggtaggcaatg 27103023  T
Q  135 gaggaagatttccttgagg 153  Q
    |||||| ||| ||||||||    
T  27103022 gaggaacattaccttgagg 27103004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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