View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_11 (Length: 470)
Name: NF10261A_low_11
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 6 - 388
Target Start/End: Complemental strand, 9037247 - 9036873
Alignment:
| Q |
6 |
ataatttacatatttataggcgtgggtgtagaataccagagtttatagctcattatttaaacaccgccattagaaccaacatgccaattgccaaatatgt |
105 |
Q |
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| T |
9037247 |
ataatttacatatttataggcgtgggtgtagaataccagagtttatagctcattatttaaacaccaccattagaaccaacatgccaa-------atatat |
9037155 |
T |
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| Q |
106 |
attttgtaaatacacaacatggaatttgaaattacatttttaaaaaaggacagactaatgttgggtgagtacgtagattataaataaaacttctaaggac |
205 |
Q |
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| T |
9037154 |
tttttgtaaatacacaacatggaatttgaaattacatttttaaaaaaggacaaactaatgttgggtgagtacgtagaatctaaataaaatttctaaggac |
9037055 |
T |
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| Q |
206 |
aaactaatgttgggtgagtacttggaatctgaataaaaacttctataaaattgaccagccagttttttctgttagttagttaagagaggatattaattgg |
305 |
Q |
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| T |
9037054 |
aaactaatgttgggtgagtacttagaatctaaataaaa-cttctatacaattgacgagccagttttttctgttagttagttaagagaggaaattaattgg |
9036956 |
T |
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| Q |
306 |
ctcatatatataaattaacaagtgaacattaaaaaattaataatggcagtaaatccagacactagcacacaaggggaaggagt |
388 |
Q |
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| T |
9036955 |
ctcatatatataaattaacaagtgaacattaaaaaattaataatggcagtaaatccaaacactagcacacaaggggaaggagt |
9036873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 460
Target Start/End: Complemental strand, 9035871 - 9035826
Alignment:
| Q |
415 |
gatgcaacaaggcctcaaagttttgtagcgcaatttttccataaca |
460 |
Q |
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| T |
9035871 |
gatgcaacaaggcctcaaagttttgtagcgcaatttttccataaca |
9035826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 9042161 - 9042075
Alignment:
| Q |
201 |
aggacaaactaatgttgggtgagtacttggaatctgaataaaaacttctataaaattgaccagccagttttttctgttagttagttaagaga |
292 |
Q |
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| T |
9042161 |
aggacaaactaatgttaggtgagta----gaatctgaataaaa-cgtgtatacaattggtgagccagttttttctgttagttggttaagaga |
9042075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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