View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_110 (Length: 332)
Name: NF10261A_low_110
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_110 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 76 - 332
Target Start/End: Original strand, 52583650 - 52583923
Alignment:
| Q |
76 |
atagaaatagcttataccatgtctataaattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaata |
175 |
Q |
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| T |
52583650 |
atagaaatagcttataccatgtctataaattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaata |
52583749 |
T |
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| Q |
176 |
atttatacataaacacttatttgataaactctagcactta------------attcgaatactactcaagtatgatgcaattttctttattagtactagt |
263 |
Q |
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| T |
52583750 |
atttatacataaacacttatttgataaactctagcacttaattaagctttttattcgaatactactcaagtatgatgcaattttctttattagtactagt |
52583849 |
T |
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| Q |
264 |
gaacataaaatcag-----gaagagaagaccaaccaacctcatccaacaatgaaatgagctttgcaattttgac |
332 |
Q |
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| T |
52583850 |
gaacataaaatcaggaagagaagagaagaccaaccaacctcatccaacaatgaaatgagctttgcaattttgac |
52583923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 19395153 - 19395216
Alignment:
| Q |
103 |
aattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttt |
167 |
Q |
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| T |
19395153 |
aattctccaagatagctaatgaaaacattt-tatagcttatacaaaaacaatttgattttcgttt |
19395216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 38033934 - 38033892
Alignment:
| Q |
160 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
202 |
Q |
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| T |
38033934 |
ttttgttatataaataacttatacataaacacttatttgataa |
38033892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 43133932 - 43133890
Alignment:
| Q |
160 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
202 |
Q |
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| T |
43133932 |
ttttgttttagaaataatttatacataaatacttatgtgataa |
43133890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 5939051 - 5939015
Alignment:
| Q |
159 |
tttttgttttaaaaataatttatacataaacacttat |
195 |
Q |
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|||||||| ||||||||| |||||||||||||||||| |
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| T |
5939051 |
tttttgttataaaaataacttatacataaacacttat |
5939015 |
T |
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