View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_112 (Length: 331)
Name: NF10261A_low_112
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_112 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 36523479 - 36523782
Alignment:
| Q |
1 |
taaggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaacttcccagatgattgaagcattgtaaaatacatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36523479 |
taaggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaactccccagatgattgaagcattgtaaaatacatc |
36523578 |
T |
|
| Q |
101 |
atcaccaggacatgtccaaggacttccttttggcaataatgattcatcgcatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36523579 |
atcaccaggacatgtccaaggacttccttttggcaataatgattcatcacatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaca |
36523678 |
T |
|
| Q |
201 |
gatgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtcttcaagaaaccctaatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36523679 |
gatgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtcttcaagaaaccctagtg |
36523778 |
T |
|
| Q |
301 |
cttg |
304 |
Q |
| |
|
|||| |
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|
| T |
36523779 |
cttg |
36523782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 36530312 - 36530603
Alignment:
| Q |
1 |
taaggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaacttcccagatgattgaagcattgtaaaatacatc |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36530312 |
taaggaaaaaccaattcaattcgggataaacaccgtctttggtaaacattctctttggccctacaactccccagatgattgaagcattgtaaaatacatc |
36530411 |
T |
|
| Q |
101 |
atcaccaggacatgtccaaggacttccttttggcaataatgattcatcgcatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||| | | |
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| T |
36530412 |
atcaccaggacatgtccaaggactaccttttggcaataatgattcatcacatatgttctcaatagatgttagaagccaccatgcggttccaaagtgaaca |
36530511 |
T |
|
| Q |
201 |
gatgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtcttcaagaaa |
292 |
Q |
| |
|
||||||| |||||| |||||||| || ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| |
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| T |
36530512 |
gatgaagcaactactgtgcctacaagttgcacaatgaacattgattttggtgcaattttcatatagtggcctaatttgaagtcaccaagaaa |
36530603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 36535924 - 36536206
Alignment:
| Q |
1 |
taaggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaacttcccagatgattgaagcattgtaaaatacatc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| || || ||||||||||||||| |||| |
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| T |
36535924 |
taaggaaaaaccaattcatcccaggataaacgccgtcattggtaaacattctctttggccctacaactccccatataatggaagcattgtaaaatgcatc |
36536023 |
T |
|
| Q |
101 |
atcaccaggacatgtccaaggacttccttttggcaataatgattcatcgcatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaaa |
200 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| | |
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| T |
36536024 |
atcaccaggacacgtccaaggactacctttcggcaacaacgattcatcacatatgttctctatagatgttagaagccaccatgctgttccaaagtggaca |
36536123 |
T |
|
| Q |
201 |
gatgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtc |
283 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36536124 |
gacaaagaaactacagtgccgactagctgcacaataaacattgattttggtggaattttcatatagtggcctaatttgaagtc |
36536206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 42059907 - 42059621
Alignment:
| Q |
3 |
aggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaacttcccagatgattgaagcattgtaaaatacatcat |
102 |
Q |
| |
|
||||||||||||||||| |||| |||| || || ||||||||||| || | ||| ||||| ||| |||| |||||||||||||||||||| ||||||| |
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| T |
42059907 |
aggaaaaaccaattcattccagggtaaattccatccttggtaaacatcctttgtggtcctactactccccatatgattgaagcattgtaaaacacatcat |
42059808 |
T |
|
| Q |
103 |
caccaggacatgtccaaggacttccttttggcaataatgattcatcgcatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaaaga |
202 |
Q |
| |
|
|||||||||| ||||| ||||| || | ||||| | |||| |||| |||||||| |||| |||||||||||||||||||| | |||| | | |
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| T |
42059807 |
caccaggacaagtccatggactaccctcaggcaacattgatgcatcacatatgtttggaatagttgttagaagccaccatgctgtgctgaagtatacact |
42059708 |
T |
|
| Q |
203 |
tgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtcttcaag |
289 |
Q |
| |
|
||||| ||| | ||| ||||| | || || |||||||| | |||||| ||||||||||| || || |||||||||||||||||||| |
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|
| T |
42059707 |
tgaagcaaccaaagttcctaccaattgtactatgaacatagcttttggaggaattttcatgtagtgtcctaatttgaagtcttcaag |
42059621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 285
Target Start/End: Complemental strand, 42083784 - 42083502
Alignment:
| Q |
3 |
aggaaaaaccaattcatctcaggataaacgccgtctttggtaaacattctctttggccctacaacttcccagatgattgaagcattgtaaaatacatcat |
102 |
Q |
| |
|
||||||||||||||||| |||| || | || || ||||| ||||| || ||||| ||||| | | |||| |||||||||||||||||||| || |||| |
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| T |
42083784 |
aggaaaaaccaattcattccagggtatattccatccttggtgaacatcctttttggtcctactattccccatatgattgaagcattgtaaaaaacctcat |
42083685 |
T |
|
| Q |
103 |
caccaggacatgtccaaggacttccttttggcaataatgattcatcgcatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaaaga |
202 |
Q |
| |
|
|||||||||| ||||| ||||| || | |||||| | ||||| ||||||||||| |||| |||||||||||||||||||| | ||| | | |
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|
| T |
42083684 |
caccaggacaagtccatggactaccatctggcaacattgatttatcgcatatgtgtggaatagttgttagaagccaccatgctgtgctgaagcatacact |
42083585 |
T |
|
| Q |
203 |
tgaagaaactacagtgcctactagctgcacaatgaacattgattttggtggaattttcatataatggcctaatttgaagtctt |
285 |
Q |
| |
|
||||||||| | ||| ||||| | ||||| |||||||| |||||||| ||||||||||| || || |||||||||||||||| |
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|
| T |
42083584 |
tgaagaaaccaaagttcctaccaattgcactatgaacatagattttggaggaattttcatgtagtgtcctaatttgaagtctt |
42083502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 285
Target Start/End: Complemental strand, 42075168 - 42074922
Alignment:
| Q |
39 |
ttggtaaacattctctttggccctacaacttcccagatgattgaagcattgtaaaatacatcatcaccaggacatgtccaaggacttccttttggcaata |
138 |
Q |
| |
|
||||| ||||| || ||||| ||||| | | |||| |||||||||||||||||||| || || ||||||||||| ||||| ||||| || | |||||| | |
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|
| T |
42075168 |
ttggtgaacatcctttttggtcctactattccccatatgattgaagcattgtaaaaaacctcgtcaccaggacaagtccatggactaccatctggcaaca |
42075069 |
T |
|
| Q |
139 |
atgattcatcgcatatgttctcgatagaagttagaagccaccatgctgttccaaagtggaaagatgaagaaactacagtgcctactagctgcacaatgaa |
238 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||||||||| || |||| | | ||||| ||| | ||| ||||| | ||| || ||||| |
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|
| T |
42075068 |
ttgatttatcgcatatgtgtggaatagtcgttagaagccaccatgctgtgccgaagtatacacttgaagcaaccaaagttcctaccaactgtactatgaa |
42074969 |
T |
|
| Q |
239 |
cattgattttggtggaattttcatataatggcctaatttgaagtctt |
285 |
Q |
| |
|
||| |||||||| ||||||||||| || | |||||||||||||||| |
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|
| T |
42074968 |
catagattttggaggaattttcatgtagagacctaatttgaagtctt |
42074922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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